Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M20
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 613 SCSKLNSRPDRAILSSPGVPPXGHQPL*YHTDSNISPH 500
           +C      P  A    P   P  H P  YH     SPH
Sbjct: 298 ACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPH 335


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 563 RAGQNGAVWSGIQFTTTILC 622
           R   +G+V  G++FTTT+ C
Sbjct: 142 RLSGDGSVTYGMRFTTTLAC 161


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 601 VYYNYTLSNNGVPTFSTDSY 660
           +YY + ++    P + TDSY
Sbjct: 114 LYYEFDVATKEPPPWETDSY 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,321
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)