Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M20
(861 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27980.1 68416.m03492 pectinesterase family protein contains ... 29 4.0
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 29 4.0
At3g10720.1 68416.m01290 pectinesterase, putative contains simil... 29 4.0
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 29 4.0
At4g02330.1 68417.m00317 pectinesterase family protein contains ... 29 5.3
At4g03930.1 68417.m00556 pectin methylesterase, putative similar... 28 7.0
At1g11590.1 68414.m01330 pectin methylesterase, putative similar... 28 7.0
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 28 9.2
At1g02580.1 68414.m00209 maternal embryogenesis control protein ... 28 9.2
>At3g27980.1 68416.m03492 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 497
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 544 GPXVVPPGWTEWRGLVGNSVYYNYTLSNNG 633
G V P GWT W+G G S + N G
Sbjct: 419 GDLVDPAGWTPWKGETGLSTLHYREYQNRG 448
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 553 VVPPGWTEWRGLVGNSVYYNYTLSNNG 633
V P GW EW G +G Y SN G
Sbjct: 541 VQPVGWLEWNGTIGLDTIYYGEYSNFG 567
>At3g10720.1 68416.m01290 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 263
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 553 VVPPGWTEWRGLVGNSVYYNYTLSNNG 633
V P GW EW G +G Y SN G
Sbjct: 185 VQPVGWLEWNGTIGLDTIYYGEYSNFG 211
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 222 ILTDDQDVVLGGMDPMT---------NVQRFIGKEGITFTNSYVTSPICCPSRASLLTGM 374
I DD + L GMDP+ ++ I + + +S ++S +C RAS L+
Sbjct: 176 IQVDDDVISLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCLTPRASNLSNA 235
Query: 375 YVHNHKTVNNS-LHGG 419
+ + T NN HGG
Sbjct: 236 EIFSVNTPNNRFFHGG 251
>At4g02330.1 68417.m00317 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 573
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 553 VVPPGWTEWRGLVGNSVYYNYTLSNNGVPTFSTD 654
V P GW EW G S Y +N G + +TD
Sbjct: 497 VEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTD 530
>At4g03930.1 68417.m00556 pectin methylesterase, putative similar to
pectin methylesterase GI:1617588 from [Lycopersicon
esculentum]
Length = 535
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 544 GPXVVPPGWTEWRGLVGNSVYYNYTLSNNG 633
G V P GWT W G G S + N G
Sbjct: 457 GDLVDPAGWTPWEGETGLSTLHYREYQNRG 486
>At1g11590.1 68414.m01330 pectin methylesterase, putative similar to
fruit-specific pectin methylesterase GI:1617583 from
[Lycopersicon esculentum]
Length = 524
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 544 GPXVVPPGWTEWRGLVGNSVYYNYTLSNNG 633
G V P GWT W G G S + N G
Sbjct: 446 GDLVDPAGWTPWEGETGLSTLHYREYQNRG 475
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.9 bits (59), Expect = 9.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 420 IRREDCCSRSCGCERTC 370
+ E CC + CGC ++C
Sbjct: 624 LTNETCCEKYCGCSKSC 640
>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
GI:3089625 from [Arabidopsis thaliana]; contains Pfam
profile PF00856: SET domain
Length = 689
Score = 27.9 bits (59), Expect = 9.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 420 IRREDCCSRSCGCERTC 370
+ E+CC + CGC + C
Sbjct: 463 LTHENCCEKYCGCSKDC 479
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,050,244
Number of Sequences: 28952
Number of extensions: 306492
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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