Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M19
         (1234 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.8  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   6.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 164 GGP*XXPPPPXSXXNXPGXP*KFXKKKXPXGXKPPGXF 277
           GGP   PPPP      P  P     K  P    PPG F
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793



 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
 Frame = -2

Query: 651 GGXPPPPXXFXXXXXXGGXXXPPXFF----FXGGKXKXPPPP 538
           GG PPPP         GG   PP         GG    PPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 164 GGP*XXPPPPXSXXNXPGXP*KFXKKKXPXGXKPPGXF 277
           GGP   PPPP      P  P     K  P    PPG F
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793



 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
 Frame = -2

Query: 651 GGXPPPPXXFXXXXXXGGXXXPPXFF----FXGGKXKXPPPP 538
           GG PPPP         GG   PP         GG    PPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 164 GGP*XXPPPPXSXXNXPGXP*KFXKKKXPXGXKPPGXF 277
           GGP   PPPP      P  P     K  P    PPG F
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376



 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
 Frame = -2

Query: 651 GGXPPPPXXFXXXXXXGGXXXPPXFF----FXGGKXKXPPPP 538
           GG PPPP         GG   PP         GG    PPPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -2

Query: 657 GGGGXPPPPXXFXXXXXXGGXXXPPXFFFXGGKXKXPPPPXKK 529
           G GG PPPP         G    PP  +   G    PPPP  +
Sbjct: 329 GMGGMPPPPPP-GMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR 370


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -2

Query: 657 GGGGXPPPPXXFXXXXXXGGXXXPPXFFFXGGKXKXPPPPXKK 529
           G GG PPPP         G    PP  +   G    PPPP  +
Sbjct: 339 GMGGMPPPPPP-GMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR 380


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 530 FXXGGGGXXXFPPXKKKXGGXXXPPXFXXXXKXXGGGGXPPPP 658
           F  G G    FPP  +  GG    P         GG G PPPP
Sbjct: 760 FGRGAGPMSSFPPPPR--GGMHHMPPPPSFRGGRGGHGGPPPP 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,202,568
Number of Sequences: 27780
Number of extensions: 251528
Number of successful extensions: 547
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)