Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M19
         (1234 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   32   0.67 
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    30   2.7  
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family...    29   8.3  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 32.3 bits (70), Expect = 0.67
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -2

Query: 657 GGGGXPPPPXXFXXXXXXGGXXXPPXFFFXGGKXKXPPPPXK 532
           G GG PPPP              PP      G    PPPP +
Sbjct: 586 GSGGPPPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPPPR 627



 Score = 29.5 bits (63), Expect = 4.7
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 539 GGGGXXXFPPXKKKXGGXXXPPXFXXXXKXXGGGGXPPPP 658
           G GG    PP      G   PP         G  G PPPP
Sbjct: 586 GSGGPPPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPP 625


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
 Frame = +2

Query: 539 GGGGXXXFPPXKKKXGGXXXPPXFXXXXK------XXGGGGXPPPPXXXXXXXXXFFFXF 700
           GGG    +PP  +  GG   PP +    +         G    PPP         F++  
Sbjct: 75  GGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPPPNPIVPYFPFYYHT 134

Query: 701 XPP 709
            PP
Sbjct: 135 PPP 137


>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 147

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +2

Query: 539 GGGGXXXFPPXKKKXGGXXXPPXFXXXXKXXGGGGXPPPP 658
           GGG     PP     GG   PP +       G GG  PPP
Sbjct: 61  GGGSYYYSPPPPSSSGGVKYPPPYG----GDGYGGYYPPP 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,945
Number of Sequences: 28952
Number of extensions: 254574
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3161286888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)