Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M18
(1055 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.12
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 31 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.2
06_01_0486 - 3455030-3455770 31 1.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.7
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 30 3.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 6.2
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 29 6.2
03_05_0067 - 20460206-20460703,20461255-20461530 29 8.2
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXG--XXPPXFFXKXXSXXPPXKKXGXLSPPP 384
PP P + G GG+ PPP G PP PP G PPP
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGP-PPPP 1221
Query: 385 RGXXXPPPXG 414
G P P G
Sbjct: 1222 GGRGLPAPPG 1231
>08_02_1204 - 25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 1055 GXGXGGGGXXGGKGEXKXXPPXPP 984
G G GGGG GKG PP PP
Sbjct: 76 GGGRGGGGKNKGKGVAAAAPPPPP 99
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.2
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPX-KKXGXLSPPPR 387
PP P K G PPP PP PP KK G PPP+
Sbjct: 326 PPPPPPPKAAPPPPPPKG--PPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383
Query: 388 GXXXPPP 408
G PP
Sbjct: 384 GGASRPP 390
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 277 PPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGXXXPPP 408
PPP+ ++ PP + PP K PP +G PPP
Sbjct: 317 PPPKPAAAAPPPPP--PPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
>06_01_0486 - 3455030-3455770
Length = 246
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +2
Query: 899 PXXPNXXPXHTPPXXXSXXXXXFXPPXPXXXXXXXXSP-PLSPXXHXPPPXP 1051
P P P + PP PP P P P SP + PPP P
Sbjct: 102 PYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSP 153
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/66 (27%), Positives = 21/66 (31%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRG 390
PP P +F PPPQ+ PP + S PP PP
Sbjct: 62 PPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121
Query: 391 XXXPPP 408
PPP
Sbjct: 122 PPPPPP 127
>10_08_0936 - 21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Frame = +2
Query: 908 PNXXPXHTPPXXXSXXXXXFXPPXPXXXXXXXXSPPLSP-XXHXPPP 1045
P P TPP S PP P PP P H PPP
Sbjct: 78 PALAPTPTPPPPSSTASSSLPPPTPLLPKHQQAPPPPPPTQSHQPPP 124
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 899 PXXPNXXPXHTPPXXXSXXXXXFXPPXPXXXXXXXXSPPLSPXXHXPPPXP 1051
P P+ P PP S PP P PP P PPP P
Sbjct: 1147 PPLPSDSPPCQPPLPPSPPPAT-PPPPPPLSPSLPPPPPPPPLPSGPPPQP 1196
>04_04_1628 + 34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 1049 GXGGGGXXGGKGEXKXXPP 993
G GGGG GG+GE PP
Sbjct: 18 GVGGGGGGGGEGEGNQSPP 36
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 277 PPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGXXXPPP 408
PPPQ + PP +F PP G P PPP
Sbjct: 6 PPPQWAMGPPPPPQYFQAGPPPPPPQYFQGAHPPAAMWGQPPPP 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,183
Number of Sequences: 37544
Number of extensions: 441652
Number of successful extensions: 3497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3129488528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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