Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M18
(1055 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.60
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.4
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.2
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 5.6
U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog (hedg... 29 7.4
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 29 7.4
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 29 7.4
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 29 7.4
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 9.7
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 9.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 9.7
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.34
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +3
Query: 312 PSLFXKKXXXFXPPXKXGXIIXPPPGXXXTPPXGXXXXXXXXXXXXXXGXXPPPP 476
P K F PP I PPPG PP G PPPP
Sbjct: 54 PGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPR 387
PP P GGI PPP + PP F PP G PPR
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF--GAPPPPPPPSGLGVAPQPPR 131
Score = 28.7 bits (61), Expect = 7.4
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +1
Query: 265 GIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPR--GXXXPPP 408
G PPP PP F PP G + PPP G PPP
Sbjct: 72 GFIPPPPGPGGIPPPPPMF---AGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 32.3 bits (70), Expect = 0.60
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -1
Query: 1055 GXGXGGGGXXGGKGEXKXXPPXPPXXAXEXXXXXXXXXXXXGCGXXG 915
G G GGGG GG G P PP A GCG G
Sbjct: 91 GCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGG 137
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 283 PQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGXXXPPPXG 414
P ++ G PP + PP + G PPP G PPP G
Sbjct: 247 PPLAGSGSPPPP----PAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +1
Query: 208 NPPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPR 387
+PP P G GG PPP+ S PP PP + G P
Sbjct: 271 SPPPPPT---GSPPPPPAGG-SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT 326
Query: 388 GXXXPPP 408
G PPP
Sbjct: 327 GSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 283 PQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGXXXPPPXG 414
P ++ G PP + PP + G PPP G PPP G
Sbjct: 268 PPLAGSGSPPPP----PAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +1
Query: 208 NPPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPR 387
+PP P G GG PPP+ S PP PP + G P
Sbjct: 292 SPPPPPT---GSPPPPPAGG-SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT 347
Query: 388 GXXXPPP 408
G PPP
Sbjct: 348 GSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 283 PQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGXXXPPPXG 414
P ++ G PP + PP + G PPP G PPP G
Sbjct: 253 PPLAGSGSPPPP----PAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +1
Query: 208 NPPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPR 387
+PP P G GG PPP+ S PP PP + G P
Sbjct: 277 SPPPPPT---GSPPPPPAGG-SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT 332
Query: 388 GXXXPPP 408
G PPP
Sbjct: 333 GSPPPPP 339
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +1
Query: 214 PXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGX 393
P P K T G P I+ G PP PP G L P G
Sbjct: 684 PLPPPTKMNLSAPSTSAGGSSALPPITG-GPPPPPGLPPITGGPPPPPPPGGLPPITGGP 742
Query: 394 XXPPPXG 414
PPP G
Sbjct: 743 PPPPPPG 749
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +1
Query: 214 PXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGX 393
P P K T G P I+ G PP PP G L P G
Sbjct: 684 PLPPPTKMNLSAPSTSAGGSSALPPITG-GPPPPPGLPPITGGPPPPPPPGGLPPITGGP 742
Query: 394 XXPPPXG 414
PPP G
Sbjct: 743 PPPPPPG 749
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +1
Query: 214 PXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGX 393
P P K T G P I+ G PP PP G L P G
Sbjct: 267 PLPPPTKMNLSAPSTSAGGSSALPPITG-GPPPPPGLPPITGGPPPPPPPGGLPPITGGP 325
Query: 394 XXPPPXG 414
PPP G
Sbjct: 326 PPPPPPG 332
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/68 (30%), Positives = 22/68 (32%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRG 390
PP P T G PPP SS PP + PP G PPP
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG-MPGMPPPPPPS 323
Query: 391 XXXPPPXG 414
PP G
Sbjct: 324 RFGPPGMG 331
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/68 (30%), Positives = 22/68 (32%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRG 390
PP P T G PPP SS PP + PP G PPP
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG-MPGMPPPPPPS 333
Query: 391 XXXPPPXG 414
PP G
Sbjct: 334 RFGPPGMG 341
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 1055 GXGXGGGGXXGGKG--EXKXXPPXPP 984
G G GGGG GG G + PP PP
Sbjct: 192 GGGMGGGGGSGGSGGGSGRFPPPPPP 217
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1054 GGXGGGXVXXGGKGRXXXPPPXP 986
GG GGG GG G PPP P
Sbjct: 23 GGGGGGYSGGGGGGGDAAPPPPP 45
>U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 8 protein.
Length = 373
Score = 28.7 bits (61), Expect = 7.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 985 GGXGGXXFXSPFPPXXPPPPXP 1050
GG G F P P PPPP P
Sbjct: 216 GGGGNNGFFVPVPVVIPPPPPP 237
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/47 (27%), Positives = 16/47 (34%)
Frame = +1
Query: 268 IXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRGXXXPPP 408
+ PPP + P PP + PPP G PPP
Sbjct: 52 VRKPPPSLPPSTMPPGPHGMPFMGGPPPHHQYHLQYPPPHGLGPPPP 98
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like (grd
related) protein16, isoform b protein.
Length = 453
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 985 GGXGGXXFXSP-FPPXXPPPPXP 1050
GG GG +P PP PPPP P
Sbjct: 50 GGGGGSYAAAPALPPPPPPPPAP 72
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like (grd
related) protein16, isoform a protein.
Length = 393
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 985 GGXGGXXFXSP-FPPXXPPPPXP 1050
GG GG +P PP PPPP P
Sbjct: 50 GGGGGSYAAAPALPPPPPPPPAP 72
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.3 bits (60), Expect = 9.7
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 280 PPQISSXGXXPPXFFXKXXSXXPPXKKXGXLS--PPPRGXXXPPP 408
P Q++ G PP + + G ++ PPP+G PPP
Sbjct: 122 PNQMAMYGGVPPPHYPSSNGPSQQGYRPGPVTNGPPPQGQYPPPP 166
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/71 (23%), Positives = 21/71 (29%)
Frame = +1
Query: 196 KXXKNPPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLS 375
K PP P + + PPP G PP +
Sbjct: 69 KGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPP 128
Query: 376 PPPRGXXXPPP 408
PPP+G PPP
Sbjct: 129 PPPKGTGSPPP 139
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 9.7
Identities = 18/68 (26%), Positives = 22/68 (32%)
Frame = +1
Query: 211 PPXPXXHKFGXXXKKTXGGIXXPPPQISSXGXXPPXFFXKXXSXXPPXKKXGXLSPPPRG 390
PP P G + + P PP F + PP +PPP G
Sbjct: 666 PPVPHPPPMGFPFQHQLTQLPGQPRPAGLPPGVPPMF--NLNAPPPPGIPGYPPAPPPPG 723
Query: 391 XXXPPPXG 414
PPP G
Sbjct: 724 VGPPPPQG 731
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,390
Number of Sequences: 27780
Number of extensions: 227823
Number of successful extensions: 1212
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2814342022
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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