Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M17
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   2.1  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   6.3  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   6.3  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    24   6.4  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    26   8.4  

>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 578 ESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKHS 685
           E  K ++   +++ LAK K  DA + + K IDL H+
Sbjct: 14  EQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 845 FPGTSFVVTHYEIIXYFISYCQRSVQLQFL 756
           FP    VVT Y+II YF+S  +R+ +  F+
Sbjct: 515 FPMRIVVVTMYDIIVYFLSDLKRNARSFFI 544


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 455 FVSYYSHKPKQFLCRDMFRVRVDSLSPISLDIRPCSLPIKLLFPSTGPALWTISEIF 285
           F+  Y  + K  L      +R+ SLS      R  ++ ++  FPS    LW IS ++
Sbjct: 68  FLQTYGKQEKNLLAYFKASIRIKSLS----HQRKAAVELQKNFPSRKHTLWVISSLY 120


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 580 LGSVMNIIIKGEVIFFKILFILH 512
           LG ++N ++KG +  + +L I+H
Sbjct: 162 LGKIINSMVKGLIYLYNVLHIIH 184


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 812 HNELLRRTSLEKIAWGEILXPSNGKSN 892
           H ++ RR    K+AW E L    G +N
Sbjct: 386 HRKVTRRKGDAKVAWQEKLKDKGGVAN 412



 Score = 20.6 bits (41), Expect(2) = 6.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 653 ELDKIIDLKHSKKCEREG 706
           ++ + +DLKH K   R+G
Sbjct: 377 DISRHLDLKHRKVTRRKG 394


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
 Frame = +2

Query: 545 LTFNYYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKHS-------KKCERE 703
           L  N Y+    E   +  ++++      Y     Y EL  + D + +        +C+R 
Sbjct: 103 LVGNVYVRFKYEESAQNAIDDLNSRW--YSQRPVYAELSPVTDFREACCRQHETSECQRG 160

Query: 704 GFCDLVHDK 730
           G C+ +H K
Sbjct: 161 GLCNFMHAK 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,947
Number of Sequences: 5004
Number of extensions: 76083
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)