Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M17
(899 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2) 31 0.96
SB_39315| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0) 31 0.96
SB_4418| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 31 1.3
SB_49302| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_35420| Best HMM Match : Not3 (HMM E-Value=6) 30 2.9
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 29 3.9
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 29 3.9
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014) 29 5.1
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
>SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2)
Length = 407
Score = 31.5 bits (68), Expect = 0.96
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +2
Query: 557 YYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKHSKKCEREGFCDLVHDKN 733
Y H + + V+E+I+ + YK+ DA +++D++ + E E D++
Sbjct: 195 YMPHEVNQDLPKTVIEQIQLKYSTYKICDAIQQIDEVFECLTVSDKEAEAIESTTRDQS 253
>SB_39315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.5 bits (68), Expect = 0.96
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 437 ANNTKRTIATAKAFVDAAFPDCNINVKYEKDFKKNDLTFNYYIHNTTESYKRKVVEEIEE 616
AN + +A A VD P C ++ +K + +N+L Y + T + RK V +
Sbjct: 2 ANWSSTAVAAALELVDP--PGCRNSITKDKMYGRNELIARYILMKTGKMRTRKQVASHIQ 59
Query: 617 MLAKYKL 637
+LA+ K+
Sbjct: 60 VLARKKI 66
>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
Length = 876
Score = 31.5 bits (68), Expect = 0.96
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 759 ELELNGPLTIGNEVXDN--FIMSYYEGRPWKKLRGEKSXSRAMESLT 893
E LNG LT+G + DN F SY W K +G+++ S +LT
Sbjct: 751 EFLLNGKLTLGENIADNGGFKSSYRAYHNWLKKKGDETWSLPGLNLT 797
>SB_4418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 31.5 bits (68), Expect = 0.96
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +2
Query: 557 YYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKHSKKCEREGFCDLVHDKN 733
Y H + + V+E+I+ + YK+ DA +++D++ + E E D++
Sbjct: 262 YMPHEVNQDLPKTVIEQIQLKYSTYKICDAIQQIDEVFECLTVSDKEAEAIESTTRDQS 320
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 31.1 bits (67), Expect = 1.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 557 YYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDKIID 673
Y H + + V+E+I+ + YK+ DA +++D++ +
Sbjct: 536 YMPHEVNQDLPKTVIEQIQLKYSTYKICDAIQQIDEVFE 574
>SB_49302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 31.1 bits (67), Expect = 1.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 557 YYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDKIID 673
Y H + + V+E+I+ + YK+ DA +++D++ +
Sbjct: 100 YMPHEVNQDLPKTVIEQIQLKYSTYKICDAIQQIDEVFE 138
>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +1
Query: 259 KPHR*IHEQNISEMVQRAGPVDGKRSFI-----GRLHGRISNEMGDRESTLTRNMSRQRN 423
KPH H QN S ++ A P+D K ++ + G+ E + L + RQRN
Sbjct: 469 KPHESDHSQNKSHHIKPALPMDNKAPYVHPNTKQQFQGKPGGEAAREKKDLEKPKRRQRN 528
>SB_35420| Best HMM Match : Not3 (HMM E-Value=6)
Length = 392
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 506 INVKYEKDFKKNDLTFNYYIHNTTESY 586
+ +KY+KDFK + T N + T+E Y
Sbjct: 194 VKLKYDKDFKGHSTTTNNLLEETSEQY 220
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 380 IENQLLPGTCPDK-ETVL-VYANNTKRTIATAKA--FVDAAFPDCNINVKYEKDFKKNDL 547
IEN + G+C D+ T+L Y +N + + ++ + A PD N +V FK ++
Sbjct: 303 IENSFVLGSCHDQCPTMLSTYCDNNLMCLRSGQSEVYTICARPDSNFDVTNLTSFKSRNV 362
Query: 548 TF 553
TF
Sbjct: 363 TF 364
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 307 RAGPVDGKRSFIGRLHGRISNEMGDRESTLTRNMSRQRNC 426
RA D +G L+ S+E GD+ +TLT+++ R+C
Sbjct: 1537 RAETADDDGDGLGNLNKDGSSESGDKRATLTQSLGDVRDC 1576
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 280 EQNISEMVQRAGPVDGKRSFIGRLHGRISNEMGDRESTLTRNMSRQR 420
EQ ++ Q G ++ I + HG+I G E TLT R R
Sbjct: 224 EQTHGKIEQNRGKIEETHGKIEQTHGKIEQTHGKIEQTLTARAERNR 270
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 280 EQNISEMVQRAGPVDGKRSFIGRLHGRISNEMGDRESTLTRNMSRQR 420
EQ ++ Q G ++ I + HG+I G E TLT R R
Sbjct: 781 EQTRGKIEQTRGKIEQTHGKIEQTHGKIEQTHGKIEQTLTARAERNR 827
>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 596 VVEEIEEMLAKYKLTDAYEELDKIIDLKHSKKC----EREGFCDLVHDKNIILLSRWRGT 763
VV E +E A D+Y+ LDK ID+ SKKC +++GF + + L R+ T
Sbjct: 162 VVHEAQEPCAHTYEPDSYDYLDKRIDIL-SKKCVDELKKQGFKEKYISTEVFLHMRYDKT 220
>SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)
Length = 178
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 280 EQNISEMVQRAGPVDGKRSFIGRLHGRISNEMGDRESTLTRNMSRQR 420
EQ ++ Q G ++ I + HG+I G E TLT R R
Sbjct: 111 EQTRGKIEQTRGKIEQTHGKIEQTHGKIEQTHGKIEQTLTARAERNR 157
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 524 KDFKKNDLTFNYYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKHSKK 691
K K N NY H+ T+ K+K E IE+ + + + E K+ID K K+
Sbjct: 46 KIVKLNKAVMNY--HSVTDREKKKEEERIEKERMRRLMAEDEEGYRKLIDHKKDKR 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,056,444
Number of Sequences: 59808
Number of extensions: 534602
Number of successful extensions: 1351
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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