Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M17
(899 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 31 0.79
At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t... 31 1.4
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 30 1.8
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 28 7.3
At2g02690.1 68415.m00208 hypothetical protein 28 7.3
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 28 7.3
At1g44030.1 68414.m05079 DC1 domain-containing protein contains ... 28 7.3
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 28 7.3
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 28 7.3
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 28 9.7
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 9.7
At1g32730.1 68414.m04036 expressed protein 28 9.7
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-... 28 9.7
>At5g57000.1 68418.m07114 expressed protein similar to unknown
protein (gb|AAF21159.1)
Length = 187
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 557 YYIHNTTESYKRKVVEE--IEEMLAKYKLTDAYEELDKIIDLKHSKKCEREG 706
++ H T + E ++E+ A L A EE++ +ID HSKK E++G
Sbjct: 96 HHHHKETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKEKDG 147
>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
synthetase, mitochondrial precursor (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
Length = 709
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 338 LLEGYMGEYLTKWVIENQLLPGTCPDKETVLVYANNTKRTIATAKAFVDAAFPDCNINVK 517
LLE Y G++ W+ Q + CP E YA ++ I A +VDA D I+ K
Sbjct: 598 LLEHYKGKW-PFWISPRQAI--VCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKK 654
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 532 KILFILHVYITVRECGIDKRLRS-SYGSFRIIRINQNSFFVGTCSG*ELIL 383
K+ F+LH + V +CG K+L S S IIRI F G G EL++
Sbjct: 4 KLSFLLHKFPLVSKCGFIKKLASESSNDSNIIRIPD---FPGGAEGFELVI 51
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 215 QVLIFSRHNIRVSFSNRIDEY 277
QV+ +R N R F NRIDEY
Sbjct: 831 QVVELARQNFRPEFMNRIDEY 851
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 200 CLHLEQVLIFSRHNIRVSFSNRI 268
C+H+ Q + SRH+ RVSF++ +
Sbjct: 278 CIHVPQTIRISRHHHRVSFTSSL 300
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 200 CLHLEQVLIFSRHNIRVSFSNRI 268
C+H+ Q + SRH+ R+SF++ +
Sbjct: 139 CIHIPQTIRMSRHDHRISFTSSL 161
>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 597
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 200 CLHLEQVLIFSRHNIRVSFSNRIDE 274
C+ L +V+ SRH R+SF+ DE
Sbjct: 455 CISLPRVIRISRHQHRISFTTSFDE 479
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 656 LDKIIDLKHSKKCEREGFCDLVHDKN 733
LD ++D HSKK G DL+ D N
Sbjct: 627 LDGVLDFLHSKKMTEAGPIDLIDDDN 652
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 656 LDKIIDLKHSKKCEREGFCDLVHDKN 733
LD ++D HSKK G DL+ D N
Sbjct: 667 LDGVLDFLHSKKMTEAGPIDLIDDDN 692
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 27.9 bits (59), Expect = 9.7
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Frame = +2
Query: 365 LTKWVIENQLLPGTCPDKETVLVYANNTKRTIATAKAFVDAAFPDCNINVKYEKDFKKN- 541
L++ IE + L + PD E + N + A A +A + NVK +K KKN
Sbjct: 39 LSEAEIEKKELNTSLPDLEEIFSEFLNKRDHEAAANGNTEANVVEAVENVKKDKKKKKNK 98
Query: 542 ----DLTFNYYIHNTTESYKRKVVEEIEEMLAKYKLT--DAYEELDKIID--LKHSKK 691
++T + T + V E+ ++ K K+T + +E D +I+ +K KK
Sbjct: 99 ETKVEVTEEEKVKETDAVIEDGVKEKKKKKETKVKVTEEEKVKETDAVIEDGVKEKKK 156
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-containing
protein similarity to TETRATRICOPEPTIDE REPEAT PROTEIN 2
, human, SWISSPROT:TTC2_HUMAN; contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 527 PFHTSRLYYSQGMRHRQTPSQ*LWF 453
PFH+SR + +G R+ PS WF
Sbjct: 1132 PFHSSRRNWREGWSSRKDPSTPRWF 1156
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 575 TESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKH---SKKCEREG 706
TES+K+++ E ++ L K K D D D+K KK E +G
Sbjct: 206 TESFKKRIAETVKAGLVKLKRLDLGSSSDDQDDIKRRVKRKKWEEKG 252
>At1g20610.1 68414.m02575 cyclin, putative similar to
G2/mitotic-specific cyclins (B-like cyclin) from
{Medicago varia} SP|P46278, SP|P46277; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 429
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 596 VVEEIEEMLAKYKLTDAYEELDKIIDLKHSKKCEREGFCDLVHD 727
++EEIE+M + ++ DA +E + +ID+ K + +HD
Sbjct: 137 MLEEIEQMEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYIHD 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,209,904
Number of Sequences: 28952
Number of extensions: 378421
Number of successful extensions: 1124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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