Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M15
         (869 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    28   8.6  

>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 166 QSPSATSVGSGSRSPTKASAGPRTA 240
           QSPSA S+GS  RSP     G RT+
Sbjct: 753 QSPSADSLGSSVRSPPPPYPGSRTS 777


>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1935

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 551  LVFQTHTYHILS*TNNKLLKVTTCYITY*GLN 456
            L  +T   HI   ++  LL+V  CY  Y GLN
Sbjct: 1156 LTAKTKNLHIFDLSSQHLLRVVECYDAYFGLN 1187


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 132 SKVLQRLNKNASISECYLCRIWE*ITHKSFCWPTNSQ 242
           +K+LQR++K+  +    LC  +E I  K+   P N++
Sbjct: 517 TKLLQRMSKDHQVLNKMLCEEYEKIAEKALTSPANTE 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,543,067
Number of Sequences: 59808
Number of extensions: 291884
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)