Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M14
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 120 4e-28
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 82 1e-16
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 72 1e-13
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.88
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 28 1.5
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 28 1.5
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 27 3.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 4.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 6.2
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 6.2
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 26 6.2
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 26 8.2
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 8.2
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 26 8.2
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 120 bits (288), Expect = 4e-28
Identities = 55/92 (59%), Positives = 67/92 (72%)
Frame = +2
Query: 269 KHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTI 448
K GD +TMHYTGTL +G KFDSS DR PF IGVGQ+I+GWD+G+ M +GEK KLTI
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77
Query: 449 PASLGYGERGAGNVIPPHATLHFEVELINIGD 544
GYG RG +IPP++TL F+VEL+ I D
Sbjct: 78 TPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 81.8 bits (193), Expect = 1e-16
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Frame = +2
Query: 200 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIG 373
+ P+ LK VV V G + +G + M Y G L++G FD + + +PF F +G
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILG 306
Query: 374 VGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 538
G+VI+GWD G+ M G +RK+TIPA + YG + IP ++TL FEV+L+ +
Sbjct: 307 RGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 72.1 bits (169), Expect = 1e-13
Identities = 39/110 (35%), Positives = 63/110 (57%)
Frame = +2
Query: 209 EVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVI 388
+V E V +G +K ++M Y G L +G FD + +PFTF +G+ +VI
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVI 312
Query: 389 KGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 538
KGWD G++ M VG +R + IPA++ YG + IP ++ L F+V+L+ +
Sbjct: 313 KGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 517 EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQALVPSL 389
++ ++GR H+AG + GC Q +FL+ V ++ SL
Sbjct: 996 QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 584 DKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKRQKR 748
D+DN +E+S+++ ++ + +D E +D K + EE+ Q+E+ R+K+
Sbjct: 415 DQDN----QEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQ 465
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 185 PGPRFAGPEVTELKTEVVSVPEGCTTKSKH 274
P P F ++T L+ +++ +PEG +T KH
Sbjct: 171 PQPTFDDLQLTPLQRKLMGLPEGGSTSGKH 200
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 470 ERGAGN-VIPPHATLHFEVEL 529
E G GN +IPP + H+EVEL
Sbjct: 42 EPGHGNLIIPPDVSAHYEVEL 62
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 572 EIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIK 679
E D +KDN + EE +D ++ GG+++ D K
Sbjct: 51 EADGEKDNGMDEEEQNDAQPSKIPWLPGGKINADEK 86
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 335 SYDRDQPFTFQIGVGQVIKGWDQGLL---DMCVGEKRKLTIPASLGYGERGAGNVIP 496
SY +QP T + G+ Q G QGLL +G R+ SLG + G +P
Sbjct: 1549 SYYAEQPETIEQGLRQGYSGLKQGLLGAKSTLMGLPRETRSHKSLGGVAQTVGRKVP 1605
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 566 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQM 685
F+ + K+N+ R E+ +YL+ Q +P D EDIK++
Sbjct: 307 FEILYNSKENVEKRTEIDEYLQIQPLPTD-----EDIKKI 341
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 524 ELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKK--QMVPADGGEVSEDIK 679
E +N V + I+ D R++V DYLKK Q + + E E +K
Sbjct: 296 EKLNDASYDQTRRVLQYINGFSDGSRDRQDVEDYLKKVLQELLCEAEECKEKVK 349
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 524 ELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDI---KQMLES 694
++IN P F + A K M + V D++KK +P G + ED KQ
Sbjct: 416 KMINYLQKPVQHEAFFKKYASKKFMKASLFVRDWIKKNSIPL-GDDADEDYTFHKQKRIQ 474
Query: 695 HDKLVEE 715
HD EE
Sbjct: 475 HDMKDEE 481
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 467 GERGAGNVIPPHATLHFEVELINIGDSP 550
G+ G+G + P AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 500 HATLHFEVELINIGDSPPATNVFKEIDADKDNMLSREEVSD-YLKKQ 637
H L+ + ELI+ S VF+ ID N+ R+ D Y+K++
Sbjct: 265 HKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTGGDIYVKRK 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,067
Number of Sequences: 5004
Number of extensions: 59902
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -