Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M14
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      196   1e-50
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)             139   2e-33
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                34   0.13 
SB_32882| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6)           32   0.71 
SB_17290| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6)           32   0.71 
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     31   1.6  
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)                29   3.8  
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)                 29   5.0  
SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)                    29   6.6  
SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)                28   8.8  
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   28   8.8  
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)                    28   8.8  
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)                   28   8.8  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  196 bits (479), Expect = 1e-50
 Identities = 101/174 (58%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
 Frame = +2

Query: 218 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVIKGW 397
           ELK EVVS PE CT K+  GD L+MHYTG L +G+KFDSS DR + F F +G G VI+GW
Sbjct: 26  ELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGW 85

Query: 398 DQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI-GDSPPATNVFKE 574
           +QGLLDMC+GEKRKLTIP  L YGE GAG  IPPHATL+ +VEL+ I G      NVF  
Sbjct: 86  EQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGM 145

Query: 575 IDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDK 736
           ID + D +L++EEV +YLK+Q     GG  S+D      SHD +V EIFQ EDK
Sbjct: 146 IDKNNDKVLTQEEVKNYLKEQ-----GGMPSDD----EASHDTIVSEIFQQEDK 190


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score =  139 bits (337), Expect = 2e-33
 Identities = 70/179 (39%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
 Frame = +2

Query: 218 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRD---QPFTFQIGVGQVI 388
           +++ E   VP  C  K+K GD + +HYTG + DG  FD++ D     QPF F IG G VI
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVI 158

Query: 389 KGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHFEVELINIGDSPPA 556
           KG++QG+  MCVG+KRK+ IP +L YG++G+    GN+   + TL + +EL ++   PP 
Sbjct: 159 KGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVRKPPPH 218

Query: 557 TNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHED 733
           +++F  +D + D  LSREEVS Y++KQ   A+        ++    H+++V+ +F++ED
Sbjct: 219 SDMFSHMDENGDRKLSREEVSAYMRKQ---AEAQFAPTYDQRWQHHHERMVDNVFEYED 274


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 275 GDMLTMHYTGTLDD----GHKFDSSYDRDQPFTFQIGVGQVIKG 394
           GD + + YTG L +    G  FDS+   D+ F F+ G G+VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_32882| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6)
          Length = 170

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +2

Query: 539 GDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLES 694
           GD  P+ N  + ++  ++  L+ EE++  + ++++   GG+ SE I++  ES
Sbjct: 43  GDKKPSANFLEFLNTLQETPLTLEELARAVDREILTEAGGQASERIREFDES 94


>SB_17290| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6)
          Length = 231

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +2

Query: 539 GDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLES 694
           GD  P+ N  + ++  ++  L+ EE++  + ++++   GG+ SE I++  ES
Sbjct: 54  GDKKPSANFLEFLNTLQETPLTLEELARAVDREILTEAGGQASERIREFDES 105


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 569  KEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKRQKR 748
            KE + + D   ++EE  +  KK+    +  E  +D K+  +   K  EE  + +++R+K 
Sbjct: 1906 KENEEEDDKKNNKEENEEDEKKEKKKKEENEEEDDKKKKTKKKKKKEEEEQEEDERRRKE 1965

Query: 749  XH 754
             H
Sbjct: 1966 IH 1967


>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
          Length = 633

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 566 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSE 670
           F E+D +KD+++SREE  +Y +++     G E+ +
Sbjct: 576 FDEVDVNKDSLISREEFINYQQEKYKRLMGREMPD 610


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 601 EHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSAL 470
           E V+ + V  +E V  R  + DV QLH + + S+GR  V+   L
Sbjct: 181 ESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLL 224


>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
          Length = 198

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 563 VFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVE 712
           +F+EID D    +   E+S+ LKK  +     ++   +K M  ++D  ++
Sbjct: 73  IFQEIDEDNSGYIDHNEISNALKKLDINLPSRQIDGILKGMDLNNDNRID 122


>SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +2

Query: 467 GERGAGNVIPPH-ATLHFEVELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMV 643
           G   A N++     T H   + I   D      + KE + ++      EE+     ++ +
Sbjct: 130 GRAAAANIMVDFDRTSHLSAKNIEARDRERKRIIEKEKEEEEKKRKEEEELERRKHQERM 189

Query: 644 PADGGEVSEDIKQMLESHDKLVEEIFQHEDKRQKRXHQ 757
                E +E +KQM++   K  E   + E+KR+K+  +
Sbjct: 190 EIQRRE-AEKVKQMMDELRKKEERRRKREEKRRKKKEE 226


>SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)
          Length = 403

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 566 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSE 670
           F E+DADKD  ++ EE+     + +    GG V E
Sbjct: 340 FAEVDADKDGFVTPEEMMSLHSRDLERLLGGTVQE 374


>SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 563 VFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVE 712
           + +E+D +KD  ++ EE++D++K          V  D+K+   + D  V+
Sbjct: 76  LIREVDNNKDGAVTTEELTDWVKGVFKKRSMEGVDNDLKEKDANEDGKVD 125


>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = -2

Query: 640 HLLLQIVAHFFAGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSALSVA 461
           H L     H F  E +    VDF+   C  WR+     +    Q + G   +  S L + 
Sbjct: 734 HRLFLYGIHGFFDEIMFTATVDFIASGCSDWRLRGHSSMWSLFQYAFGSYLIERSFLFLK 793

Query: 460 QGCGNSQFT 434
           Q    S+FT
Sbjct: 794 QNTALSRFT 802


>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 1053

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -1

Query: 353  VDRDHNSSRTCVRRLACQCSAW*AYRRAWTSWC 255
            V  D +S   C R   C    W    +AW  WC
Sbjct: 956  VSPDASSFEYCARNRRCASQRWKDSAKAWLLWC 988


>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
          Length = 375

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 462 PKDAGIVSLRFSPTHMSSKPWSHPLITC 379
           PK  G  S      H SS  W HP ++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSC 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,802,859
Number of Sequences: 59808
Number of extensions: 497112
Number of successful extensions: 1246
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)