Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M13
         (1284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/67 (23%), Positives = 17/67 (25%)
 Frame = +3

Query: 807  PPPPXXKKKXGGGGXXXXXXXXXXXXXXGEQKXXXGPXPPPXXXFFXFXXPPPPPTXXXG 986
            PPPP  +    G                       G  PPP         PP PP    G
Sbjct: 338  PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397

Query: 987  RGXXXXP 1007
            R     P
Sbjct: 398  RSAPALP 404


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 919 PPPPPXXFFXFXXPPPP 969
           PPPPP  F     PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 915 PXPPPXXXFFXFXXPPPPP 971
           P PPP   F     PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 912 GPXPPPXXXFFXFXXPPPPP 971
           GP PPP         PPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,238
Number of Sequences: 5004
Number of extensions: 23884
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)