Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M13
         (1284 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 35   0.16 
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.5  
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.6  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   30   4.6  
SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.0  

>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 17/58 (29%), Positives = 17/58 (29%)
 Frame = +1

Query: 796 GXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXXFFXFXXPPPP 969
           G  PPPPP                       GG        PPPPP        PPPP
Sbjct: 162 GGPPPPPPIAPAATVPAPAVPLAAASPPPPSGGPPPPPPPPPPPPPPPILELAAPPPP 219


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
 Frame = +3

Query: 807  PPPPXXKKKXGGGGXXXXXXXXXXXXXXGEQKXXXG---PXPPPXXXFFXFXXPPPPP 971
            PPPP  KK   GG               G          P PPP         PPPPP
Sbjct: 889  PPPPVMKKPSRGGSLKESRLHPPLPSIHGSTDSLDSLPLPPPPPELLGSDADLPPPPP 946



 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
 Frame = +1

Query: 805  PPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXP-PPPPXXFF--XFXXPPPP 969
            PPPPP  KK   G                G+     + P PPPP          PPPP
Sbjct: 888  PPPPPVMKKPSRGGSLKESRLHPPLPSIHGSTDSLDSLPLPPPPPELLGSDADLPPPP 945


>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 919 PPPPPXXFFXFXXPPPP 969
           PPPPP  F+    PPPP
Sbjct: 51  PPPPPPRFYDNDIPPPP 67



 Score = 29.5 bits (63), Expect = 6.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 894 EQKXXXGPXPPPXXXFFXFXXPPPPP 971
           E +    P PPP   F+    PPPPP
Sbjct: 43  EPRDRERPPPPPPPRFYDNDIPPPPP 68



 Score = 29.1 bits (62), Expect = 8.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 915 PXPPPXXXFFXFXXPPPPP 971
           P PPP   F+    PPPPP
Sbjct: 65  PPPPPRRGFYDDYPPPPPP 83


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/58 (27%), Positives = 17/58 (29%)
 Frame = +1

Query: 796 GXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXXFFXFXXPPPP 969
           G  PPPPP  +                            A PPPPP        PPPP
Sbjct: 323 GTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPP 380


>SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 922 PPPPXXFFXFXXPPPPQ 972
           PPPP   F F  PPPP+
Sbjct: 11  PPPPEKCFGFRTPPPPR 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759,840
Number of Sequences: 59808
Number of extensions: 316075
Number of successful extensions: 1918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4046571655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)