Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M13
(1284 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 23 6.5
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 25 8.6
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 25 8.7
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 25 9.0
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +1
Query: 760 PXPFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXX 939
P P G G PPPPP + G G + PP PP
Sbjct: 320 PPPSRFGPPGMGGMPPPPPPG--MRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
Query: 940 FFXFXXPPPP 969
PPPP
Sbjct: 378 HGMIPPPPPP 387
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/71 (25%), Positives = 20/71 (28%)
Frame = +3
Query: 795 GXXXPPPPXXKKKXGGGGXXXXXXXXXXXXXXGEQKXXXGPXPPPXXXFFXFXXPPPPPT 974
G PPPP + G G P PPP + PPPPP
Sbjct: 294 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
Query: 975 XXXGRGXXXXP 1007
G P
Sbjct: 354 RYPSAGPGMYP 364
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +1
Query: 760 PXPFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXX 939
P P G G PPPPP + G G + PP PP
Sbjct: 330 PPPSRFGPPGMGGMPPPPPPG--MRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
Query: 940 FFXFXXPPPP 969
PPPP
Sbjct: 388 HGMIPPPPPP 397
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/71 (25%), Positives = 20/71 (28%)
Frame = +3
Query: 795 GXXXPPPPXXKKKXGGGGXXXXXXXXXXXXXXGEQKXXXGPXPPPXXXFFXFXXPPPPPT 974
G PPPP + G G P PPP + PPPPP
Sbjct: 304 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
Query: 975 XXXGRGXXXXP 1007
G P
Sbjct: 364 RYPSAGPGMYP 374
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/70 (31%), Positives = 22/70 (31%)
Frame = +1
Query: 760 PXPFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXX 939
P P G G PPPPP G GG PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPPGG----CPPPPPPPPPG 778
Query: 940 FFXFXXPPPP 969
F PPPP
Sbjct: 779 GFKGGPPPPP 788
Score = 29.1 bits (62), Expect = 7.1
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +1
Query: 766 PFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXXFF 945
P G G PPPPP G GG PPPPP
Sbjct: 714 PPPPGLPPITGGPPPPPP------PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 946 XFXXPPPP 969
PPPP
Sbjct: 768 CPPPPPPP 775
Score = 28.7 bits (61), Expect = 9.4
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 912 GPXPPPXXXFFXFXXPPPPPTXXXGRGXXXXPXXXFXXXXPPXXXXRXXXXXFXXXXPXX 1091
GP PPP PPPPP P PP P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 1092 PAPXXGGGGGGXXXP 1136
P P GG G P
Sbjct: 772 PPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/70 (31%), Positives = 22/70 (31%)
Frame = +1
Query: 760 PXPFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXX 939
P P G G PPPPP G GG PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPPGG----CPPPPPPPPPG 778
Query: 940 FFXFXXPPPP 969
F PPPP
Sbjct: 779 GFKGGPPPPP 788
Score = 29.1 bits (62), Expect = 7.1
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +1
Query: 766 PFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXXFF 945
P G G PPPPP G GG PPPPP
Sbjct: 714 PPPPGLPPITGGPPPPPP------PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 946 XFXXPPPP 969
PPPP
Sbjct: 768 CPPPPPPP 775
Score = 28.7 bits (61), Expect = 9.4
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 912 GPXPPPXXXFFXFXXPPPPPTXXXGRGXXXXPXXXFXXXXPPXXXXRXXXXXFXXXXPXX 1091
GP PPP PPPPP P PP P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 1092 PAPXXGGGGGGXXXP 1136
P P GG G P
Sbjct: 772 PPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/70 (31%), Positives = 22/70 (31%)
Frame = +1
Query: 760 PXPFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXX 939
P P G G PPPPP G GG PPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPPGG----CPPPPPPPPPG 361
Query: 940 FFXFXXPPPP 969
F PPPP
Sbjct: 362 GFKGGPPPPP 371
Score = 29.1 bits (62), Expect = 7.1
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +1
Query: 766 PFXXGXXXFXGXXPPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXXFF 945
P G G PPPPP G GG PPPPP
Sbjct: 297 PPPPGLPPITGGPPPPPP------PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 946 XFXXPPPP 969
PPPP
Sbjct: 351 CPPPPPPP 358
Score = 28.7 bits (61), Expect = 9.4
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 912 GPXPPPXXXFFXFXXPPPPPTXXXGRGXXXXPXXXFXXXXPPXXXXRXXXXXFXXXXPXX 1091
GP PPP PPPPP P PP P
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 1092 PAPXXGGGGGGXXXP 1136
P P GG G P
Sbjct: 355 PPPPPPGGFKGGPPP 369
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 22.6 bits (46), Expect(3) = 6.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 1123 PPPPPPXXG 1097
PPPPPP G
Sbjct: 579 PPPPPPMLG 587
Score = 22.2 bits (45), Expect(3) = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 1135 GXXXPPPPPP 1106
G PPPPPP
Sbjct: 574 GAPPPPPPPP 583
Score = 20.6 bits (41), Expect(3) = 6.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -3
Query: 1120 PPPPPXXGAGXXG 1082
PPPPP G G
Sbjct: 589 PPPPPPPPGGLMG 601
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 protein.
Length = 231
Score = 25.0 bits (52), Expect(2) = 8.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 1123 PPPPPPXXGAG 1091
PPPPPP G G
Sbjct: 31 PPPPPPPCGCG 41
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 1135 GXXXPPPPPP 1106
G PPPPPP
Sbjct: 28 GCAPPPPPPP 37
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical protein
F53F1.5 protein.
Length = 215
Score = 25.0 bits (52), Expect(2) = 8.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 1123 PPPPPPXXGAG 1091
PPPPPP G G
Sbjct: 31 PPPPPPPCGCG 41
Score = 22.2 bits (45), Expect(2) = 8.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 1135 GXXXPPPPPP 1106
G PPPPPP
Sbjct: 28 GCAPPPPPPP 37
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 25.0 bits (52), Expect(2) = 9.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 1123 PPPPPPXXGAG 1091
PPPPPP G G
Sbjct: 55 PPPPPPMCGCG 65
Score = 22.2 bits (45), Expect(2) = 9.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 1135 GXXXPPPPPP 1106
G PPPPPP
Sbjct: 48 GCAPPPPPPP 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,333
Number of Sequences: 27780
Number of extensions: 326539
Number of successful extensions: 2674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2229
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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