Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M13
(1284 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 31 1.2
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 1.9
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 2.9
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 24 4.2
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 29 5.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 5.0
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 6.6
At1g26240.1 68414.m03201 proline-rich extensin-like family prote... 29 6.6
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family... 29 8.7
At3g50130.1 68416.m05480 expressed protein ; expression supporte... 29 8.7
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 8.7
At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family... 29 8.7
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 31.5 bits (68), Expect = 1.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 919 PPPPPXXFFXFXXPPPP 969
PPPPP F F PPPP
Sbjct: 50 PPPPPLYFSYFSLPPPP 66
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 915 PXPPPXXXFFXFXXPPPPP 971
P PPP F F PPPPP
Sbjct: 49 PPPPPPLYFSYFSLPPPPP 67
>At1g59910.1 68414.m06749 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect(2) = 1.9
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +1
Query: 919 PPPPPXXFFXFXXPPPPQXXXXXGXXXXXXXXXXXXPXPPXXXXG 1053
PPPPP PPPP G P PP G
Sbjct: 397 PPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNPKG 441
Score = 21.4 bits (43), Expect(2) = 1.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 805 PPPPPXXKK 831
PPPPP KK
Sbjct: 395 PPPPPPPKK 403
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains leucine-rich
repeats, Pfam:PF00560; contains proline rich extensin
domains, INTERPRO:IPR002965
Length = 470
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = +2
Query: 914 PXPPPXXXFFFXFXXPPPPNXXXXXGXXXXPXXXFXXXPPPP 1039
P PPP + + PPPP+ P + P PP
Sbjct: 400 PPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSPP 441
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 24.2 bits (50), Expect(2) = 4.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 1123 PPPPPPXXGA 1094
PPPPPP GA
Sbjct: 698 PPPPPPPPGA 707
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 1135 GXXXPPPPPPXXG 1097
G PPPPPP G
Sbjct: 677 GGPPPPPPPPGGG 689
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 29.5 bits (63), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 921 PPPXXXFFXFXXPPPPPTXXXGRG 992
PPP ++ PPPPP G+G
Sbjct: 95 PPPPRFYYFESTPPPPPLSPDGKG 118
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.5 bits (63), Expect = 5.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 919 PPPPPXXFFXFXXPPPP 969
PPPPP ++ PPPP
Sbjct: 619 PPPPPPTYYAVQSPPPP 635
Score = 28.7 bits (61), Expect = 8.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 915 PXPPPXXXFFXFXXPPPPP 971
P PPP ++ PPPPP
Sbjct: 618 PPPPPPPTYYAVQSPPPPP 636
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.1 bits (62), Expect = 6.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 892 GNKXXXXAXPPPPPXXFFXFXXPPPP 969
GN + PPPPP + PPPP
Sbjct: 259 GNNNWMNSPPPPPPGSWQPSPPPPPP 284
>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
similar to hydroxyproline-rich glycoprotein precursor
gi|727264|gb|AAA87902; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 478
Score = 29.1 bits (62), Expect = 6.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 919 PPPPPXXFFXFXXPPPP 969
PPPPP + + PPPP
Sbjct: 460 PPPPPSYSYSYSSPPPP 476
>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 302
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 919 PPPPPXXFFXFXXPPPP 969
PPPPP F PPPP
Sbjct: 102 PPPPPQPLNLFSPPPPP 118
>At3g50130.1 68416.m05480 expressed protein ; expression supported
by MPSS
Length = 564
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 919 PPPPPXXFFXFXXPPPP 969
PPPPP F PPPP
Sbjct: 12 PPPPPPSFRSIPRPPPP 28
>At1g31810.1 68414.m03904 formin homology 2 domain-containing protein
/ FH2 domain-containing protein low similarity to
SP|P48608 Diaphanous protein {Drosophila melanogaster};
contains Pfam profile PF02181: Formin Homology 2(FH2)
Domain
Length = 1201
Score = 28.7 bits (61), Expect = 8.7
Identities = 21/84 (25%), Positives = 22/84 (26%), Gaps = 6/84 (7%)
Frame = +1
Query: 805 PPPPPXXKKKXXGXXXXXXXXXXXXXXXGGNKXXXXAXPPPPPXXFFXF------XXPPP 966
PPPPP + GNK PPPPP PPP
Sbjct: 603 PPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPPPPP 662
Query: 967 PQXXXXXGXXXXXXXXXXXXPXPP 1038
P G P PP
Sbjct: 663 PPPTSHSGSIRVGPPSTPPPPPPP 686
>At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 144
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 913 AXPPPPPXXFFXFXXPPPP 969
A PPPPP + PPPP
Sbjct: 79 ALPPPPPKKVSSYCPPPPP 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,755
Number of Sequences: 28952
Number of extensions: 353953
Number of successful extensions: 3508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2863
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3325635136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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