Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M11
         (994 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.062
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.77 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.062
 Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
 Frame = -3

Query: 854 NXVGXXXXXXGGGGRPPXXXGGGVFVSXFXXG---GGGAXCXKXPPPXXXPFXGXGGXXG 684
           N  G      G GG PP   G G F      G   GG       P        G GG  G
Sbjct: 186 NGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 683 GPGGGXXGFCXG 648
           G GGG  GF  G
Sbjct: 246 GFGGGLGGFGGG 257



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 575 GGGXGXPPPXGGGF 616
           GGG G PPP  GGF
Sbjct: 194 GGGSGGPPPGPGGF 207



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 711 GGXXGGXGFXTXGPPPPP 764
           GG  GG G  + GPPP P
Sbjct: 187 GGGFGGFGGGSGGPPPGP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
 Frame = -2

Query: 738 KXPXPPXXPLXXXGGXXXGPRGGXXGILRXGAPP--SVXGXXXXPPPXGGGXPXPPPP 571
           K P PP  P     G      G     L    PP  S        PP G   P PPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 2.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 661 PXXPPPGPPXXPP 699
           P  PPP PP  PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 21.8 bits (44), Expect(2) = 2.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 658 NPXXPPPGPP 687
           NP  PPP PP
Sbjct: 188 NPPPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 639 PSVXGXXXXPPPXG--GGXPXPPPP 571
           P + G    PPP G  G  P PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
 Frame = -2

Query: 642 PPSVXGXXXXPPP----XGGGXPXPPPP 571
           P  + G    PPP     G G P PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 928 PPPPXFPXXGGGGXXPXPXP 987
           PPPP  P   G G  P P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 646 SPXQNPXXPPPGPPXXPPXPXK 711
           S    P  PPP P   PP P K
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSK 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,044
Number of Sequences: 5004
Number of extensions: 25891
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)