Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M11
(994 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 38 0.014
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 36 0.018
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 35 0.096
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 35 0.096
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 34 0.17
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 33 0.22
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 33 0.22
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 33 0.22
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 33 0.22
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 33 0.22
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 33 0.29
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 33 0.39
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 33 0.39
At1g27710.1 68414.m03387 glycine-rich protein 33 0.39
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 32 0.68
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 32 0.68
At1g15830.1 68414.m01900 expressed protein 32 0.68
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 31 0.90
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro... 31 1.2
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 31 1.2
At4g33660.1 68417.m04781 expressed protein 31 1.6
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 31 1.6
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 31 1.6
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 30 2.1
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 2.1
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 30 2.1
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 30 2.1
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 30 2.7
At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin; g... 30 2.7
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 30 2.7
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 30 2.7
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 29 3.6
At4g01985.1 68417.m00265 expressed protein 29 3.6
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 29 3.6
At2g25970.1 68415.m03117 KH domain-containing protein 29 3.6
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 29 3.6
At1g61080.1 68414.m06877 proline-rich family protein 29 3.6
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 29 3.6
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 4.0
At5g62210.1 68418.m07811 embryo-specific protein-related contain... 29 4.8
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 29 4.8
At1g62240.1 68414.m07021 expressed protein 29 4.8
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 29 6.3
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 29 6.3
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 29 6.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 6.3
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 29 6.3
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 6.3
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ... 25 6.9
At5g46730.1 68418.m05757 glycine-rich protein 28 8.4
At3g24250.1 68416.m03044 glycine-rich protein 28 8.4
At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein ... 28 8.4
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 8.4
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/64 (39%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Frame = +1
Query: 559 PPXXXGGGXGX------PPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXPXKGXX 720
PP GGG PP GGG GGG P PPP PP PP G
Sbjct: 655 PPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPP--PPGAL-GRG 711
Query: 721 XGGG 732
GGG
Sbjct: 712 AGGG 715
Score = 36.7 bits (81), Expect = 0.024
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = -3
Query: 737 KXPP--PXXXPFXGXGGXXGGPGGGXXGFCXGEPPPVXXXXXXXPPPXGGGXPXPPPXXX 564
K PP P P GG G PPP PPP GG P PPP
Sbjct: 646 KRPPRVPRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPP 705
Query: 563 G 561
G
Sbjct: 706 G 706
Score = 35.5 bits (78), Expect = 0.055
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 642 PPSVXGXXXXPPPXGGGXPXPPPPXXXG 559
PP G PPP GG P PPPP G
Sbjct: 682 PPPPPGGGPPPPPGGGPPPPPPPPGALG 709
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = -2
Query: 738 KXPXPPXXPLXXXGGXXXGPRGGXXGILRXGAPPSVXGXXXXPPPXGGGXPXPPPPXXXG 559
+ P PP P GG + G PP PPP GG P PPPP G
Sbjct: 650 RVPRPP--PRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGP-PPPPPPPG 706
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +2
Query: 626 PXTLGGAPXRKIPF----XPPRGPXXXPPXXXRGXXGGXGXXNXXPPPPP 763
P + GG +P P GP PP G G PPPPP
Sbjct: 656 PRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPP 705
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 387 GGPKKPXXPPFXPKXXFFPPXXGGGGPXPP 298
GGP P PP PP GGG P PP
Sbjct: 677 GGPPPPPPPPGGGP----PPPPGGGPPPPP 702
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 35.5 bits (78), Expect = 0.055
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +1
Query: 550 KPXPPXXXGGGXGXPPPXGG--GXXXXXXXTGGGSPXQNPXXPPPGPPXXPP 699
KP PP G G G PPP GG G GGG P PP PP
Sbjct: 52 KP-PPHHGGKGGGKPPPHGGKGGGPPHHGGGGGGGGKSPPVVRPPPVVVRPP 102
Score = 32.3 bits (70), Expect(2) = 0.018
Identities = 30/86 (34%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGE 645
GGG +PP GG GGG PPP G GG GGG
Sbjct: 48 GGGSKPPPHHGG--------KGGG------KPPPHGGKGGGPPHHGGGGGGGGKSPPVVR 93
Query: 644 PPPVXXXXXXXPPPXGGGXP--XPPP 573
PPPV PPP P PPP
Sbjct: 94 PPPV----VVRPPPIIRPPPVVYPPP 115
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/61 (37%), Positives = 23/61 (37%)
Frame = +1
Query: 550 KPXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXPXKGXXXGG 729
KP GGG PPP GG GGG P PP G P P G GG
Sbjct: 39 KPPQHGGGGGGGSKPPPHHGG-------KGGGKP------PPHGGKGGGP-PHHGGGGGG 84
Query: 730 G 732
G
Sbjct: 85 G 85
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -3
Query: 743 CXKXPPPXXXPFXGXGGXXGG--PGGGXXGFCXGEPPPVXXXXXXXPPPXGGG 591
C + PP P GG GG P G G+PPP PP GGG
Sbjct: 30 CTRPHPPVPKPPQHGGGGGGGSKPPPHHGGKGGGKPPP-HGGKGGGPPHHGGG 81
Score = 28.3 bits (60), Expect = 8.4
Identities = 25/75 (33%), Positives = 25/75 (33%)
Frame = +2
Query: 539 PXXKNXXPXXXGGGGXGXPPPXGGGFXXXPXTLGGAPXRKIPFXPPRGPXXXPPXXXRGX 718
P K GGGG PPP GG GG P PP G P G
Sbjct: 36 PVPKPPQHGGGGGGG-SKPPPHHGGKG------GGKP-------PPHGGKGGGPPHHGGG 81
Query: 719 XGGXGXXNXXPPPPP 763
GG G PPP
Sbjct: 82 GGGGGKSPPVVRPPP 96
Score = 23.8 bits (49), Expect(2) = 0.018
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 965 PPPPXXGKXGGGGS 924
P PP G GGGGS
Sbjct: 38 PKPPQHGGGGGGGS 51
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 34.7 bits (76), Expect = 0.096
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 559 PPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
PP GGG PPP +P P PPP P PP P
Sbjct: 39 PPMSSGGGSSVPPPVMSPMPMMTPPPMPMTPPPMPMTPPPMPMAPPPMP 87
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 34.7 bits (76), Expect = 0.096
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = -3
Query: 758 GGGAXCXKXPPPXXXPFXGX-GGXXGGPGGGXXGFCXGEPPPVXXXXXXXPPPXGGGXP- 585
GGG+ P P P G GG GP G G PPP+ PP G P
Sbjct: 136 GGGS---SFPQPGGFPASGPPGGVPSGPPSGARPIGFGSPPPMGPGMSMPPPSGMPGGPL 192
Query: 584 --XPPPXXXGG 558
PPP G
Sbjct: 193 SNGPPPSGMHG 203
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Frame = +1
Query: 586 GXPPPXG---GGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXPXKGXXXGGG 732
G PPP G GG P P PP P P G GGG
Sbjct: 87 GPPPPAAMARPGGPPQVSQPGGFPPVGRPVAPPSNQPPFGGRPSTGPLVGGG 138
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -3
Query: 848 VGXXXXXXGGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGG 669
+G GG G GGG + GG G F G GG GG GGG
Sbjct: 354 IGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGG 413
Query: 668 XXG 660
G
Sbjct: 414 GSG 416
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -3
Query: 821 GGGRPPXXXGG-GVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGG 669
GGG GG G + F GGG P P G G GG GGG
Sbjct: 254 GGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGG 305
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXG 660
GGGG P GG + GGG A + G GG GG G G G
Sbjct: 9 GGGGAPIPSYGGDGYGGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRGNRG 63
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXG 660
GGGG P GG + GGG A + G GG GG G G G
Sbjct: 9 GGGGAPIPSYGGDGYGGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRGNRG 63
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 645 APPSVXGXXXXPPPXGGGXPXPPPPXXXG 559
APP G PPP G P PPPP G
Sbjct: 392 APPPGSGGPKPPPPPGPKGPRPPPPMSLG 420
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 645 APPSVXGXXXXPPPXGGGXPXPPPPXXXG 559
APP G PPP G P PPPP G
Sbjct: 392 APPPGSGGPKPPPPPGPKGPRPPPPMSLG 420
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGP 678
GGG + GG GGGG PP P G GG GGP
Sbjct: 371 GGGVQMNGGPNGGKKGGGGGGGGGGGPMSGGLPPGFRPMGGGGGGGGGP 419
Score = 31.9 bits (69), Expect = 0.68
Identities = 28/93 (30%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXK----XPPPXXXPFXGXGGXXGGPGGGXXGF 657
GGGG+ GGG + GGGG P G G GG GGG
Sbjct: 339 GGGGKNGGKGGGGHPLDGKMGGGGGGPNGNKGGGGVQMNGGPNGGKKGGGGGGGGGGGPM 398
Query: 656 CXGEPPPVXXXXXXXPPPXGGGXPXPPPXXXGG 558
G PP GGG P GG
Sbjct: 399 SGGLPPGFRPMGGGG---GGGGGPQSMSMPMGG 428
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXG-XGGXXGGPGGGXXG 660
G GG+ GGG + GGGG K P G GG GGP G G
Sbjct: 318 GPGGKKGGPGGGGGNMGNQNQGGGGKNGGKG--GGGHPLDGKMGGGGGGPNGNKGG 371
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 33.1 bits (72), Expect = 0.29
Identities = 29/84 (34%), Positives = 29/84 (34%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGE 645
G GGR GGG F GG G P G GG G G G G G
Sbjct: 11 GRGGRGFGGRGGG---PGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG-GRGPRGPGFGP 66
Query: 644 PPPVXXXXXXXPPPXGGGXPXPPP 573
P P P GGG P P P
Sbjct: 67 RGPGPWSGPRGPRPGGGGGPGPGP 90
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/80 (32%), Positives = 26/80 (32%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGE 645
GG G P G G F GG G P P G GP G G G
Sbjct: 29 GGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGP--RGPGPWSGPRGPRPGG-GGG 85
Query: 644 PPPVXXXXXXXPPPXGGGXP 585
P P P P GGG P
Sbjct: 86 PGPGPWSGPRGPRPGGGGGP 105
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Frame = +1
Query: 562 PXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXP-PXP---XKGXXXGG 729
P G G G P G G G P P P PG P P P +G GG
Sbjct: 42 PGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGGGPGPGPWSGPRGPRPGG 101
Query: 730 G 732
G
Sbjct: 102 G 102
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 32.7 bits (71), Expect = 0.39
Identities = 22/61 (36%), Positives = 24/61 (39%)
Frame = -3
Query: 821 GGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGEP 642
G GR GGG + GGGG + G GG GG GG G GEP
Sbjct: 581 GSGRGGYGGGGGGYGGGGGYGGGGG------------YGGGGGYGGGYGGASSGGYGGEP 628
Query: 641 P 639
P
Sbjct: 629 P 629
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 32.7 bits (71), Expect = 0.39
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 574 GGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
GG PPP P P PPP PP PP P
Sbjct: 40 GGNDNNPPPSPSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPP 83
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 649 PXQNPXXPPPGPPXXPPXP 705
P P PPP PP PP P
Sbjct: 74 PSPPPCPPPPSPPPSPPPP 92
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 32.7 bits (71), Expect = 0.39
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGG-----GGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXG 660
GGGG P GGGV + GG GG P G GG G GGG G
Sbjct: 115 GGGGYGPGGGGGGVVIGGGFGGGAGYGSGGGLGWDGGNGGGGPGYGSGGGGIGGGGGIGG 174
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 31.9 bits (69), Expect = 0.68
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = -2
Query: 732 PXPPXXPLXXXGGXXXGPRGGXXGILRXGAPPSVXGXXXX--PPPXGGGXPXPPPP 571
P PP P G P G PP G PPP G P PPPP
Sbjct: 66 PPPPSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPPP 121
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +1
Query: 559 PPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXP 696
PP GGG PPP GGG P P P P P
Sbjct: 84 PPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPPPNPIVPYFP 129
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Frame = -3
Query: 731 PPPXXXPFXGXGGXXGGPGGGXXGFCXGEPPPVXXXXXXXPPPXGGGXP---XPPP 573
PPP P P G PP PPP GGG PPP
Sbjct: 55 PPPPSTPTTACPPPPSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPP 110
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = +1
Query: 553 PXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPG--PPXXPPXPXKG 714
P P P G T GGSP +P P PG PP P P G
Sbjct: 449 PPSPSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPG 504
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 553 PXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
P P P P G T GGSP +P P PG PP P
Sbjct: 475 PTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPSPG--GSPPSP 523
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 31.9 bits (69), Expect = 0.68
Identities = 33/103 (32%), Positives = 33/103 (32%), Gaps = 16/103 (15%)
Frame = -3
Query: 818 GGRPPXXXGGGVFVSXFXXGG------GGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGF 657
GGR GGV V GG GG G GG GGG
Sbjct: 44 GGRLSTGAAGGVNVDRSKGGGRRKTGDGGGDPVVISGGENHASGGMGGTSATRGGGGEPV 103
Query: 656 CXGEPPP----VXXXXXXXPPP--XGGGXP----XPPPXXXGG 558
G PPP PPP GGG P PPP GG
Sbjct: 104 IPGAPPPNRGGGETVIPGAPPPIRGGGGEPAIPGAPPPKRGGG 146
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +2
Query: 593 PPPXGGGFXXXPXTLGGAPXRKI--PFXPPRGPXXXPPXXXRGXXGGXGXXNXXPPPP 760
PPP G P L A + + P PP G PP G G PPPP
Sbjct: 224 PPPPGRAALPPPPPLPMAVRKGVAAPPLPPPGTAALPPPPPLPMAAGKGVAAPPPPPP 281
>At5g67470.1 68418.m08507 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 899
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 649 PXQNPXXPPPGPPXXPPXP 705
P Q P PPP PP PP P
Sbjct: 375 PLQTPPPPPPPPPLAPPPP 393
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 640 GGSPXQNPXXPPPGPPXXPPXP 705
G SP P PPP PP PP P
Sbjct: 373 GCSPPSPPPPPPPPPPPPPPPP 394
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 646 SPXQNPXXPPPGPPXXPPXP 705
SP P PPP PP PP P
Sbjct: 378 SPPPPPPPPPPPPPPPPPPP 397
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 637 GGGSPXQNPXXPPPGPPXXPPXP 705
G P P PPP PP PP P
Sbjct: 373 GCSPPSPPPPPPPPPPPPPPPPP 395
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 650 GEPPPVXXXXXXXPPPXGGGXPXPPPXXXG 561
G PPPV PPP P PPP G
Sbjct: 19 GPPPPVGVPPQYYPPPPPPPPPPPPPRKVG 48
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Frame = +1
Query: 553 PXPPXXXGG----GXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXPXKGXX 720
P PP GG G PP GGG P Q PPP PP
Sbjct: 309 PRPPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGGPPPQYGAVPPPQYGGAPPQNNNYQQ 368
Query: 721 XGGG 732
G G
Sbjct: 369 QGSG 372
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 650 GEPPPVXXXXXXXPPPXGGGXPXPPP 573
G PPP PPP GG PPP
Sbjct: 250 GPPPPPHIGGSAPPPPHMGGSAPPPP 275
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 650 GEPPPVXXXXXXXPPPXGGGXPXPPPXXXGG 558
G PPP PPP G PPP GG
Sbjct: 239 GGPPPQRPPMGGPPPPPHIGGSAPPPPHMGG 269
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Frame = +1
Query: 559 PPXXXGGGXGXPPPXGGGXXXXXXXTGGGSP-----XQNPXXPPP---GPPXXPP 699
PP G PPP GG GG +P QN PPP G P PP
Sbjct: 242 PPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPP 296
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 575 GGGXGXPPPXGGGFXXXPXTLGG 643
GGG G PP GGG P T GG
Sbjct: 409 GGGSGSPPSTGGGSGSPPSTGGG 431
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 562 PXXXGGGXGXPPPXGGGXXXXXXXTGGG 645
P GGG G PP GGG GGG
Sbjct: 415 PPSTGGGSGSPPSTGGGGGSPSKGGGGG 442
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 699 GGXXXGPRGGXXGILRXGAPPSVXGXXXXPPPXGGGXPXP 580
GG P GG G+PPS G PP GGG P
Sbjct: 402 GGGSPSPGGGS------GSPPSTGGGSGSPPSTGGGGGSP 435
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +1
Query: 553 PXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
P PP PPP P P PPP PP PP P
Sbjct: 1079 PPPPSPPLPPSSLPPPPPAALFPPLPPPPS-QPPPPPLSPPPSPPPPPPPP 1128
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 649 PXQNPXXPPPGPPXXPPXP 705
P ++P PPP PP PP P
Sbjct: 1129 PHESPPSPPPQPPSSPPPP 1147
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = -3
Query: 761 GGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGEPPPVXXXXXXXPPP 603
GGGG+ PPP GG P G G+ PPP PPP
Sbjct: 60 GGGGSYYYSPPPP-----SSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPPP 107
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = -3
Query: 674 GGXXGFCXGEPPPVXXXXXXXPPPXGG---GXPXPPP 573
GG + PPP PPP GG G PPP
Sbjct: 60 GGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPP 96
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 553 PXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
P PP PPP G G P PPP PP P
Sbjct: 385 PPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKP 435
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 642 PPSVXGXXXXPPPXGGGXPXPPPP 571
PPS PPP G PPPP
Sbjct: 389 PPSAAAPPPPPPPKKGPAAPPPPP 412
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 642 PPSVXGXXXXPPPXGGGXPXPPPP 571
PP + PPP G P PPPP
Sbjct: 28 PPPMRRSAPSPPPMSGRVPPPPPP 51
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 644 PPPVXXXXXXXPPPXGGGXPXPPP 573
PPP PPP G P PPP
Sbjct: 27 PPPPMRRSAPSPPPMSGRVPPPPP 50
>At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 244
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/82 (28%), Positives = 26/82 (31%)
Frame = -3
Query: 818 GGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGEPP 639
GG P GG + GG + P G GG GG GG G G+ P
Sbjct: 149 GGGPGGASGGASGGASGGASGGASGGASGGGPGGASGGGPGGASGGGPGGASGGASGDKP 208
Query: 638 PVXXXXXXXPPPXGGGXPXPPP 573
P GG P P
Sbjct: 209 --EGAPGDKPGGAWGGKPGKKP 228
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -3
Query: 401 FPXXXGGXKNPXXPXXPQKXXFFP-PXXGGGXPXXPXXF 288
FP GG P P P FP P GGG P P F
Sbjct: 137 FPSSPGGGSIPGIPGSPGFRLPFPFPPSGGGIPGLPLPF 175
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 559 PPXXXGGGXGXPP--PXGGGXXXXXXXTGGGSPXQNPXXPPPGPP 687
PP GG P P GG GGG P Q+ PPP PP
Sbjct: 45 PPPQPYGGYPPPSSRPYEGGYQGYF--AGGGYPHQHHGPPPPPPP 87
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = -3
Query: 686 GGPGGGXXGFCXGEPPP-VXXXXXXXPPPXGGGXPXPPPXXXGG 558
G P G G PPP PPP G G PP GG
Sbjct: 148 GFPAFGPSGSVAAGPPPGSRPMAFGSPPPVGSGMSMPPSGMIGG 191
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/59 (37%), Positives = 22/59 (37%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXG 648
GGGGR GGG S GG G G GG GG GGG G G
Sbjct: 461 GGGGRGSGGAGGGTGGSVGAGGGVGVGGGGGIGGGAGGGVG-GGVGGGVGGGVRGAVGG 518
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 671 GXXGFCXGEPPPVXXXXXXXPPPXGGGXPXPPPXXXGG 558
G G PPP PPP G P PPP G
Sbjct: 225 GANGLPPPPPPPPHQAQPPPPPPSGLFPPPPPPMANNG 262
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +1
Query: 577 GGXGXPPPXGG----GXXXXXXXTGGGSPXQNPXXPPPGPPXXPP 699
GG P GG G GGG+P PP GPP P
Sbjct: 586 GGYTQPAAGGGYSSDGSAGATAGGGGGTPASQSAAPPAGPPKASP 630
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/60 (40%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Frame = -3
Query: 821 GGGRPPXXXGGGVFV--SXFXXGGGG-AXCXKXPPPXXXP---FXGXGGXXGGPGGGXXG 660
GGGR GGG S GGGG C K P G GG GG GGG G
Sbjct: 109 GGGRGGGSYGGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYG 168
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Frame = -2
Query: 732 PXPPXXPLXXXGGXXXGPRGGXXGILRXGAPPSVXGXXXXPPPX-----GGGXPXPPPP 571
P PP P P G PP + PPP G G P PPPP
Sbjct: 537 PPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPP 595
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 646 SPXQNPXXPPPGPPXXPPXP 705
SP P PPP PP PP P
Sbjct: 41 SPPPPPPPPPPPPPPPPPPP 60
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 655 QNPXXPPPGPPXXPPXP 705
Q+P PPP PP PP P
Sbjct: 40 QSPPPPPPPPPPPPPPP 56
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 649 PXQNPXXPPPGPPXXPPXP 705
P P PPP PP PP P
Sbjct: 39 PQSPPPPPPPPPPPPPPPP 57
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +2
Query: 593 PPPXGGGFXXXPXTLGGAPXRKIPFXPPRGPXXXPPXXXRGXXGGXGXXNXXPPPPP 763
PPP P T P K P PP P P PPPPP
Sbjct: 549 PPPLPSFSNRDPLTTLHQPINKTPPPPPPPPPPLPSRSIPPPLAQPPPPRPPPPPPP 605
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 17/51 (33%)
Frame = +1
Query: 547 KKPXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPP 699
+ P PP P P + G + + PPP PP PP
Sbjct: 598 RPPPPPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQPPPPPPPPPP 648
Score = 25.0 bits (52), Expect(2) = 4.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 670 PPPGPPXXPPXPXK 711
PPP PP PP P +
Sbjct: 572 PPPPPPPPPPLPSR 585
Score = 24.6 bits (51), Expect(2) = 8.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 592 PPPXGGGXXXXXXXTGGGSPXQNPXXPPPGP 684
PPP T SP Q P PPP P
Sbjct: 482 PPPPPPPPPPLFTSTTSFSPSQPPPPPPPPP 512
Score = 22.6 bits (46), Expect(2) = 4.0
Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Frame = +1
Query: 553 PXPPXXXGGGXGXP--PPXGGGXXXXXXXTGGGSPXQNPXXPPPGP 684
P PP P PP T SP Q P PPP P
Sbjct: 488 PPPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPSQPPPPPPPPP 533
Score = 21.8 bits (44), Expect(2) = 8.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 658 NPXXPPPGPPXXP 696
+P PPP PP P
Sbjct: 521 SPSQPPPPPPPPP 533
>At5g62210.1 68418.m07811 embryo-specific protein-related contains
weak similarity to embryo-specific protein 3
(GI:3335171) [Arabidopsis thaliana]
Length = 223
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 649 PXQNPXXPPPGPPXXPPXP 705
P +P PPP PP PP P
Sbjct: 165 PPFSPSIPPPSPPYFPPEP 183
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = -3
Query: 821 GGGRPPXXX---GGGVFVSXFXXGGGGAXCXKXPPP--XXXPFXGXGGXXGGPGGGXXG 660
GGGR GGG + G GG+ C K P GG GG GGG G
Sbjct: 102 GGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGG 160
>At1g62240.1 68414.m07021 expressed protein
Length = 227
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/59 (33%), Positives = 20/59 (33%)
Frame = -3
Query: 824 GGGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXG 648
GGGG G G S G G P G GG GG GGG G G
Sbjct: 154 GGGGGGDGSSGSG---SGSGSGSGSGTGTASGPDVYMHVEGGGGGGGGGGGGGGGGVDG 209
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +2
Query: 539 PXXKNXXPXXXGGGGX--GXPPPXGGGFXXXPXTLGGAPX----RKIPFXPPRGPXXXPP 700
P + P GG G G PP G P G P ++ PP G PP
Sbjct: 161 PPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPP 220
Query: 701 XXXRGXXGGXGXXNXXPPPP 760
G G PP P
Sbjct: 221 PPPHGMQGPPPPRPGMPPAP 240
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +1
Query: 559 PPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXPXKG 714
PP G PPP GG G G P PPP PP P G
Sbjct: 156 PPIIRPPGQMLPPPPFGGQGPPM---GRGPPPPYGMRPPPQQFSGPPPPQYG 204
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 648 GAPPSVXGXXXXPPPXGGGXPXPPPP 571
G PP G PP GG PPPP
Sbjct: 197 GPPPPQYGQRPMIPPPGGMMRGPPPP 222
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +2
Query: 539 PXXKNXXPXXXGGGGX--GXPPPXGGGFXXXPXTLGGAPX----RKIPFXPPRGPXXXPP 700
P + P GG G G PP G P G P ++ PP G PP
Sbjct: 161 PPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPP 220
Query: 701 XXXRGXXGGXGXXNXXPPPP 760
G G PP P
Sbjct: 221 PPPHGMQGPPPPRPGMPPAP 240
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +1
Query: 559 PPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXPXKG 714
PP G PPP GG G G P PPP PP P G
Sbjct: 156 PPIIRPPGQMLPPPPFGGQGPPM---GRGPPPPYGMRPPPQQFSGPPPPQYG 204
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 648 GAPPSVXGXXXXPPPXGGGXPXPPPP 571
G PP G PP GG PPPP
Sbjct: 197 GPPPPQYGQRPMIPPPGGMMRGPPPP 222
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -2
Query: 726 PPXXPLXXXGGXXXGPRGGXXGILRXGAPPSVXGXXXXPPPXGGGXPXPPPP 571
PP G P G R S G PP GG P PPP
Sbjct: 67 PPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYYYPPPKSGGNYPYTPPP 118
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +1
Query: 541 TXKKPXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
T P PP PPP P P PP PP PP P
Sbjct: 422 TLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPP 476
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 553 PXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
P PP PPP P P PP PP PP P
Sbjct: 457 PPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPP 507
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 986 GXGXGXXPPPPXXGKXGGGG 927
G G PPPP G GGGG
Sbjct: 18 GRGRSPPPPPPRRGYGGGGG 37
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 592 PPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXPPXP 705
PPP SP P PPP P PP P
Sbjct: 113 PPPVSPPPAPTSPPPTPASPPPAPASPPPAPASPPPAP 150
>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 708
Score = 24.6 bits (51), Expect(2) = 6.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 670 PPPGPPXXPPXP 705
PPP PP PP P
Sbjct: 66 PPPPPPLPPPPP 77
Score = 22.2 bits (45), Expect(2) = 6.9
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = +1
Query: 592 PPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPPXXP 696
PPP G + P PPP PP P
Sbjct: 10 PPPSGFKRYKKKRSKKMDNKEVPPPPPPPPPPVLP 44
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Frame = -3
Query: 821 GGGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPF-XGXGGXXGGPG--GGXXGFCX 651
GGG GGG + GGGG + G GG GG G GG G+
Sbjct: 152 GGGAGASGYGGGAYGGGGGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGG 211
Query: 650 G 648
G
Sbjct: 212 G 212
>At3g24250.1 68416.m03044 glycine-rich protein
Length = 137
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = -3
Query: 818 GGRPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGG--GXXGFCXGE 645
GG G G F+ GG G P P P G G GG GG G G G
Sbjct: 65 GGGIGGVAGVGGFMG-MPGGGSGGSGMTFPLPSGTPLLGGAGGLGGLGGAMGFPGGLGGG 123
Query: 644 P 642
P
Sbjct: 124 P 124
>At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein
contains Pfam profile PF04410: Gar1 protein RNA binding
region
Length = 202
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/59 (35%), Positives = 21/59 (35%)
Frame = -3
Query: 812 RPPXXXGGGVFVSXFXXGGGGAXCXKXPPPXXXPFXGXGGXXGGPGGGXXGFCXGEPPP 636
RPP GGG GGGG G GG G GGG G E PP
Sbjct: 2 RPPMRGGGGFRGRGGRDGGGGGRFG-----GGGGRFGGGGGRFGGGGGRFGGFRDEGPP 55
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 553 PXPPXXXGGGXGXPPPXGGGXXXXXXXTGGGSPXQNPXXPPPGPP 687
P PP PP GGG GG+ PP PP
Sbjct: 62 PNPPNSSNNSPS-PPSQGGGGERGNGGNNGGNDTPPSRGSPPSPP 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,672
Number of Sequences: 28952
Number of extensions: 342588
Number of successful extensions: 3805
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2774
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2421636552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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