Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M10
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 36 0.057
02_04_0400 - 22608519-22608844,22609044-22609122 35 0.075
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 35 0.099
03_01_0515 - 3864796-3865425 33 0.30
08_01_0059 - 394001-394708 29 3.7
12_01_0841 - 7873458-7874225 29 6.5
10_08_0213 - 15912048-15912716 29 6.5
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 29 6.5
06_03_1310 + 29238644-29240260 28 8.6
02_05_0686 - 30900748-30902167,30903442-30904742 28 8.6
01_01_0070 - 542603-542686,542803-543441 28 8.6
>12_02_1174 - 26696869-26698191
Length = 440
Score = 35.5 bits (78), Expect = 0.057
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
PP PPP P PP P P P + PPP PP
Sbjct: 172 PPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPP 222
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXP 869
PP PPP PP P P P PPP P
Sbjct: 116 PPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPP 165
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 35.1 bits (77), Expect = 0.075
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -1
Query: 889 GXXXXXGGXGGGXXXXGXXXXXXXGXXXXXGXXXGGXXXXXGWVXGGGXXXPPXXGGXPX 710
G GG GGG G G G GG G GGG PP GG
Sbjct: 44 GGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYP 103
Query: 709 P 707
P
Sbjct: 104 P 104
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 34.7 bits (76), Expect = 0.099
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
PP GG PP +P PP P P P + PPP PP
Sbjct: 12 PPPQGGFPPQPPPMNPYGP--PPPQQPAYGHMPPPQGAPPPFLAPPPPPPP 60
>03_01_0515 - 3864796-3865425
Length = 209
Score = 33.1 bits (72), Expect = 0.30
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXP 869
PP G PPP P PP P P S PPP P
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSP 111
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
PP PPP P PP P P P PPP PP
Sbjct: 25 PPPPSPPIRPPPPPTPRPYAPPP---PSHPLAPPPPHISPPAPVPPPPSPP 72
>12_01_0841 - 7873458-7874225
Length = 255
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -1
Query: 889 GXXXXXGGXGGGXXXXGXXXXXXXGXXXXXGXXXGGXXXXXGWVXGGGXXXPPXXGG 719
G GG GGG G G G GG G+ GGG GG
Sbjct: 140 GGGYGQGGGGGGGGGQGGGNGSGYGSGYGSGYGQGGGASGGGYGQGGGGGGGGGQGG 196
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -1
Query: 889 GXXXXXGGXGGGXXXXGXXXXXXXGXXXXXGXXXGGXXXXXGWVXGGGXXXPPXXGG 719
G GG GGG G G G GG G+ GGG GG
Sbjct: 179 GGGYGQGGGGGGGGGQGGGNGSGYGSGYGSGYGQGGGVHAGGYGQGGGGGGGGGQGG 235
>10_08_0213 - 15912048-15912716
Length = 222
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -1
Query: 889 GXXXXXGGXGGGXXXXGXXXXXXXGXXXXXGXXXGGXXXXXGWVXGGGXXXPPXXGG 719
G GG GGG G G G GG G+ GGG GG
Sbjct: 31 GIGGEGGGGGGGGGSGGGGGYGGSGYGSGSGYGEGGGAGAGGYGHGGGGGGGGGEGG 87
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 166 GTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITA 306
GTSS SS P R R P Q PP P S +P A
Sbjct: 10 GTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQPPHPPKASSEALPCAA 56
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
PP GG P P H PP P P S PPP P
Sbjct: 487 PPQGGGGKLPFPPVHGVAYSSPP-PPPSGDKLPFPPVYGVAYSSPPPPSKP 536
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/51 (27%), Positives = 14/51 (27%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
PP PPP P PP P P P P PP
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = +3
Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
PP PPP P PP P P P + PP P
Sbjct: 82 PPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAP 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,409
Number of Sequences: 37544
Number of extensions: 311903
Number of successful extensions: 1428
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -