Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M10
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.48 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.48 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.48 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.1  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   1.5  
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81581-2|CAD56595.1|  672|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z81581-1|CAD56594.1|  655|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   5.9  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
 Frame = +3

Query: 714 GXPPXXGGXX-XPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXP--XXSXPPPXPP 872
           G PP  GG    PPP   P     PP   P     P       P      PPP PP
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
 Frame = +3

Query: 714 GXPPXXGGXXXPPPXTH-PXXXXXPPXXXPXXXXXP---XXXXXXXPXXSXPPPXPP 872
           G PP  GG   PPP    P     PP   P     P          P    PPP PP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
 Frame = +3

Query: 714 GXPPXXGGXX-XPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXP--XXSXPPPXPP 872
           G PP  GG    PPP   P     PP   P     P       P      PPP PP
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
 Frame = +3

Query: 714 GXPPXXGGXXXPPPXTH-PXXXXXPPXXXPXXXXXP---XXXXXXXPXXSXPPPXPP 872
           G PP  GG   PPP    P     PP   P     P          P    PPP PP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
 Frame = +3

Query: 714 GXPPXXGGXX-XPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXP--XXSXPPPXPP 872
           G PP  GG    PPP   P     PP   P     P       P      PPP PP
Sbjct: 317 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372



 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
 Frame = +3

Query: 714 GXPPXXGGXXXPPPXTH-PXXXXXPPXXXPXXXXXP---XXXXXXXPXXSXPPPXPP 872
           G PP  GG   PPP    P     PP   P     P          P    PPP PP
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +3

Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
           PP   G   PPP   P     PP         P            PPP PP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +3

Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
           PP   G   PPP   P     PP         P            PPP PP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = +3

Query: 708 GXGXPPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
           G G PP       PPP   P     PP         P       P    PPP PP
Sbjct: 251 GSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = +3

Query: 708 GXGXPPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
           G G PP       PPP   P     PP         P       P    PPP PP
Sbjct: 272 GSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = +3

Query: 708 GXGXPPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
           G G PP       PPP   P     PP         P       P    PPP PP
Sbjct: 257 GSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +3

Query: 720 PPXXGGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXP 869
           PP       PPP   P     PP   P     P       P    PPP P
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 732 GGXXXPPPXTHPXXXXXPPXXXPXXXXXPXXXXXXXPXXSXPPPXPP 872
           G    PPP   P     PP   P     P       P    PPP PP
Sbjct: 26  GPPPCPPPP--PPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 143 ENNNEQEKYDSREIHFDFSTKAGFEYRVRNNKYQILR 33
           + N +++K+DS E+ +  S  +G ++RV +N +  LR
Sbjct: 421 KKNTQEQKFDSWEVMWKRSATSGADFRVPDNGFAKLR 457


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 402 NFIQWSSLDFIXQGKYCSELVVRGSSWSRQSASCDG 295
           +F+  SS+D+   G  C    +    W ++S S DG
Sbjct: 154 DFVSNSSVDYFWTGLICKGNTISSCIWDKESGSADG 189


>Z81581-2|CAD56595.1|  672|Caenorhabditis elegans Hypothetical
           protein F08A10.1c protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 323 GHVSLRAVMGTGVLGLAGRDGGSCAYRRHRRTRADD 216
           GH+ L A  GT V   +G  GGSCA       R +D
Sbjct: 88  GHIQLTA-NGTPVFAYSGGGGGSCAVSPSSSARRED 122


>Z81581-1|CAD56594.1|  655|Caenorhabditis elegans Hypothetical
           protein F08A10.1b protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 323 GHVSLRAVMGTGVLGLAGRDGGSCAYRRHRRTRADD 216
           GH+ L A  GT V   +G  GGSCA       R +D
Sbjct: 88  GHIQLTA-NGTPVFAYSGGGGGSCAVSPSSSARRED 122


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = -1

Query: 889 GXXXXXGGXGGGXXXXGXXXXXXXGXXXXXGXXXGGXXXXXGWVXGGGXXXPPXXGG 719
           G     GG GGG    G       G     G   GG     G + GGG       GG
Sbjct: 157 GGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGG 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,353
Number of Sequences: 27780
Number of extensions: 255942
Number of successful extensions: 970
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)