Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M08
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    31   0.21 
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.49 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.86 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.86 
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    28   1.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   4.6  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    26   8.0  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 408 KDKSAENASAKKIVLNRPSSIS--LVSSKTVDDQINEKSVEPKTASESNXV 554
           +D+  EN +A + ++N+  + S   V+  TV+   NE+  EP    E N V
Sbjct: 438 EDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEENAV 488


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +3

Query: 324 LSEQSSTATIAVETKSTRTLKRKTNAE-TKDKSAENASAKKIVLNRPSS--ISLVSSKTV 494
           + E SS A +  E K   T K+ ++   + D +++N      V ++ +S   S ++S +V
Sbjct: 281 VEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASV 340

Query: 495 DDQINEKSVEPKT 533
           DD   E  VEP T
Sbjct: 341 DDVSEESQVEPNT 353


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 309 NEDLVLSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK 488
           N DL++SE+     + + T +     +K+N   + K+  N +        P S +  SSK
Sbjct: 272 NADLIISEEDELTEMTLRTANGSEPTKKSNRSEQSKTVANTNVGSKNGTTPRSFAQKSSK 331

Query: 489 TV 494
            +
Sbjct: 332 RI 333


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = +3

Query: 324 LSEQSSTATIAVETKSTRTLKRKTNAETKDK--SAENASAKKIVLNRPSSISLVSSK--T 491
           +S  S  ++  VET     L+  TN+E +D+  S         V    +SIS + ++  T
Sbjct: 1   MSSSSKDSSFQVETPVQNILETSTNSELQDQVSSPYEPDYNSPVKQAAASISALQTQDDT 60

Query: 492 VDDQINEKSVEPKTASESN 548
           + + ++E+++E K  ++S+
Sbjct: 61  LFNNVDERTLENKDGNKSD 79


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
 Frame = +3

Query: 360 ETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQI----NEKSVEP 527
           +T ST  + +    E+K+ SA  A+A +I     S IS  +S+  +       ++++ E 
Sbjct: 71  DTIST-DVNKPAEPESKETSAP-AAAVEIEKENESIISKETSQAPETSTGAEEHQETTEE 128

Query: 528 KTASESNXVIKINTDLXPKKRLXLRAXRFGLPIXMSESXRXEAXKQRF 671
              S SN V   +     +++L  RA RFG+P+   E  +  A   RF
Sbjct: 129 SKQSVSNEVSSPDV-AKEQEKLIQRAKRFGIPVD-DEQIKKAARAARF 174


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 327 SEQSSTATIAVETKSTRTLKRKT-NAETKDKSAEN-ASAKKIVLNRPSSISLVSSKTVDD 500
           S  +S     V  +  +   +KT NAE + K A+    + K   N  +  S  S+ TVD 
Sbjct: 88  SSPASKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSS--SAPTVDV 145

Query: 501 QINEKSVEPKTASESNXVIKINTDLXPK 584
                + EPK   + +   ++N D+  K
Sbjct: 146 SEGNSAAEPKITPDDSDTPRLNVDMNDK 173


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -3

Query: 563 YFNDXITFGCRFRLY-----RFFINLIINSFRTDK 474
           Y N  + FGC+F  Y     R+  + ++NS++ D+
Sbjct: 192 YLNPGLRFGCQFVAYPGDALRYHSHYLVNSYKWDQ 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,762
Number of Sequences: 5004
Number of extensions: 29279
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)