Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M08
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241...    29   3.7  
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    28   8.5  

>12_02_1093 +
           26023692-26023865,26023959-26024026,26024155-26024198,
           26024287-26025035,26025506-26025595,26026174-26026235,
           26026360-26026465
          Length = 430

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 330 EQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQIN 509
           E   TA +  E    +  K+K  ++TK   AEN  A+   + +PS  + V +K    +  
Sbjct: 94  EHEKTAAVVAEDAGKK--KKKKGSDTKVSEAENKVAEPSAVEKPSENADVETKEKKQKKK 151

Query: 510 EKSVE 524
            K  E
Sbjct: 152 SKKQE 156


>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 324 LSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQ 503
           LSE+ ++A + +  K     +    AE      E A A+   L R    S   + ++DDQ
Sbjct: 88  LSEKLASALLTINAKDDLVKQHTKVAEEAVAGWEQAEAEVSTLKRLLEASTQKNASLDDQ 147

Query: 504 IN 509
           +N
Sbjct: 148 VN 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,263
Number of Sequences: 37544
Number of extensions: 167469
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)