Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M08
         (871 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      32   0.70 
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_18753| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.7)           29   6.5  

>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +3

Query: 375 RTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVE 524
           R     +N+ET   S+ N ++ + +LN  SS S++S + ++  + + S++
Sbjct: 101 RRSSNMSNSETSTNSSSNNNSNRSILNSGSSKSVISDRGINSTVRQLSLQ 150


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 327 SEQSSTATIA--VETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPS-SISLVSSKTVD 497
           S  SS A++A     +S RT  RK ++E   K  E  +   +  N P  S +L    + D
Sbjct: 287 SNASSDASLADVSSVESVRTGTRKKSSERLRK--ERRTQSNLSKNAPQGSHTLGDESSSD 344

Query: 498 DQINEKSVEPKTASESNXV 554
           D   E++V+P++   S  V
Sbjct: 345 DDEKERTVKPRSGKHSGSV 363


>SB_18753| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.7)
          Length = 389

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +3

Query: 324 LSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQ 503
           ++E SS  T+    K+ +++K   N E+ D   EN+S    ++ R  S++   S+     
Sbjct: 208 MTESSSLDTMTACVKNLQSIK---NEESTDSVTENSS----LITRNESLTYRKSE----- 255

Query: 504 INEKSVEPKTASESNXVIKINTDL 575
             E+S  PK  S+ N   KIN +L
Sbjct: 256 --EESFIPKNRSDENHEEKINKEL 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,475
Number of Sequences: 59808
Number of extensions: 209946
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)