Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M08
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    33   0.33 
At5g40450.1 68418.m04905 expressed protein                             31   1.0  
At5g38840.1 68418.m04698 forkhead-associated domain-containing p...    30   2.3  
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    30   2.3  
At1g20030.2 68414.m02508 pathogenesis-related thaumatin family p...    29   4.0  
At1g20030.1 68414.m02509 pathogenesis-related thaumatin family p...    29   4.0  
At1g06160.1 68414.m00647 ethylene-responsive factor, putative si...    29   4.0  
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH...    28   7.1  
At4g19990.1 68417.m02927 far-red impaired responsive family prot...    28   9.3  
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co...    28   9.3  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    28   9.3  

>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +3

Query: 315 DLVLSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTV 494
           ++V+ +++     +VETK TRT +     E +     +   KK    +  + S +     
Sbjct: 451 EVVVMDEAREEEDSVETKDTRTYETIRGLEIEANEMIDEETKKSTETKTEAPSRIVMDKE 510

Query: 495 DDQINEKSVEPKTASESNXVIKINTD 572
            D+  +KS E +T + S  V++   D
Sbjct: 511 GDEETKKSTETETEAPSRIVMETEKD 536


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 414 KSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKTASESNXV 554
           KS E     K  L  PS +S  +SKTVD++I EK  E  T  +   V
Sbjct: 856 KSVEQMQKPK--LESPSEVSEETSKTVDEKIEEKPEEEVTLYQEGQV 900



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
 Frame = +3

Query: 312  EDLVLSEQSST-ATIAVETKSTRTLKRKTNAETKDKSAENASA------KKIVLNRPSSI 470
            E++ L ++     +  +ETK   T+    + E +++  E  S       +K  L  PS +
Sbjct: 890  EEVTLYQEGQVDGSYGLETKE-ETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEV 948

Query: 471  SLVSSKTVDDQINEK--SVE-PKTASESNXVIKINTDLXP 581
               SSKTVD++I EK  S+E  + A E   V    TDL P
Sbjct: 949  LEESSKTVDEKIEEKTDSIELGEIAQEERSV----TDLTP 984


>At5g38840.1 68418.m04698 forkhead-associated domain-containing
           protein / FHA domain-containing protein related to
           adaptor protein kanadaptin [Homo sapiens]
           gi|13562130|gb|AAK29177
          Length = 735

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +3

Query: 342 TATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSV 521
           TAT  VE   T  + RK   E K +  +++  K+  +    +++L+   +V   +NE+  
Sbjct: 612 TATAGVEVV-TGLIIRKRKQEDKSEEDDDSKEKQAEVMAQDAVALLLKHSVGHHVNEEDK 670

Query: 522 EPKTASESN 548
           E     E+N
Sbjct: 671 ELSKQEENN 679


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/100 (26%), Positives = 44/100 (44%)
 Frame = +3

Query: 327 SEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQI 506
           +  S++ + A   K  RT+++ +    +    EN  +K+      S+I   SS  V D+ 
Sbjct: 292 ANSSTSRSTADNEKPKRTVRKASTLGKELSKIENDKSKQSSRKSTSAIKEGSSVEVKDE- 350

Query: 507 NEKSVEPKTASESNXVIKINTDLXPKKRLXLRAXRFGLPI 626
            +  +  K AS SN + K       KK+    A +  LPI
Sbjct: 351 -KPRISHKKASLSNGIGKATRKSAEKKKEIADAVQKELPI 389


>At1g20030.2 68414.m02508 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 316

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 330 EQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTV-DDQI 506
           ++SST T A       T     N  T  KSAE  S + +    PSS S  SS+ V +  +
Sbjct: 226 DKSSTFTCAKSPNYVITFCPSPN--TSLKSAEEHSTETMTTTSPSSGSTTSSQMVYEGAL 283

Query: 507 NEKSVEPKT 533
           +E S  P T
Sbjct: 284 DESSGSPST 292


>At1g20030.1 68414.m02509 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 299

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 330 EQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTV-DDQI 506
           ++SST T A       T     N  T  KSAE  S + +    PSS S  SS+ V +  +
Sbjct: 209 DKSSTFTCAKSPNYVITFCPSPN--TSLKSAEEHSTETMTTTSPSSGSTTSSQMVYEGAL 266

Query: 507 NEKSVEPKT 533
           +E S  P T
Sbjct: 267 DESSGSPST 275


>At1g06160.1 68414.m00647 ethylene-responsive factor, putative
           similar to ethylene response factor 1 GB:AAD03544
           GI:4128208 from [Arabidopsis thaliana]
          Length = 244

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 381 LKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKT--ASESNXV 554
           LKRK +   + +  + +S+   + + PSS S  SS +    ++ +S +       ESN  
Sbjct: 165 LKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVVMTQESNTT 224

Query: 555 IKINTDL 575
           + +  DL
Sbjct: 225 LVVLEDL 231


>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
           (CHX28) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 381 LKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQ 503
           +K K     +DKS++NA  +  +LNR S +       +DD+
Sbjct: 583 VKLKVIRFLEDKSSQNAQKRSSILNRASVVDQEEEMKLDDE 623


>At4g19990.1 68417.m02927 far-red impaired responsive family protein
           / FAR1 family protein similar to far-red impaired
           response protein [Arabidopsis thaliana] GI:5764395;
           contains Pfam profile PF03101: FAR1 family
          Length = 672

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/93 (22%), Positives = 44/93 (47%)
 Frame = +3

Query: 228 MDSDGVFEDEEVKSQXXXXXXXXXXXXNEDLVLSEQSSTATIAVETKSTRTLKRKTNAET 407
           M+SD   + E  K+Q            +E+  LSE+S  A + V  ++ R  + K+N   
Sbjct: 534 MESDQT-DVESTKAQRYKDLCLRSLKLSEEASLSEESYNAVVNVLNEALRKWENKSNLIQ 592

Query: 408 KDKSAENASAKKIVLNRPSSISLVSSKTVDDQI 506
             + +E+ +A+ + ++   + +   +K  DD +
Sbjct: 593 NLEESESVTAQDLPIHEEQNNTYDMNK--DDNV 623


>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
           contains Pfam domain, PF00096: Zinc finger, C2H2 type;
           identical to cDNA  putative histone deacetylase (HD2A)
           GI:11066134
          Length = 245

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = +3

Query: 207 INFEFDEMDSDGVFEDEEVKSQXXXXXXXXXXXXNEDLVLSEQSSTATIAVETKSTRTLK 386
           ++ E DE DSDG+ ED+                 +     +E +  A ++ +        
Sbjct: 136 VDDEEDESDSDGMDEDDSDGEDSEEEEPTPKKPASSKKRANETTPKAPVSAKKAKVAVTP 195

Query: 387 RKTNAETKDKSAENASAK 440
           +KT+ + K   A N S K
Sbjct: 196 QKTDEKKKGGKAANQSPK 213


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
            PROSITE domains, PS00674: AAA-protein family signature
            and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +3

Query: 381  LKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKTASESNXVIK 560
            LK+K   E  D+   +A+ +    +R    ++V SK +DD      V P         + 
Sbjct: 1354 LKKKYKGEDLDQGCRDAAPQNNTDHRAGEEAVVKSKRLDD--GSLKVPP---------LP 1402

Query: 561  INTDLXPKKRLXLRAXRFGLPI 626
            IN ++ PK  L L    FG  I
Sbjct: 1403 ININVKPKSSLQLAVSTFGYQI 1424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,608
Number of Sequences: 28952
Number of extensions: 146159
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)