Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M06
         (1307 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   2.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   6.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D protein.
          Length = 255

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 924  PTTXXPPXPKPXTTTXXPDXXPPRERXPPXXPPXXSQTPPNSR 1052
            P+T  PP P+    +  P   P  ++     PP     P  +R
Sbjct: 210  PSTIPPPPPEEDDDSNIPQNNPKNKQHNFNLPPGAIPVPDKNR 252


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +2

Query: 1100 DQGTKAPEXATXXSXPTSPXNXPTPXXXPPPT 1195
            D G+  P  A   + P      PTP   P P+
Sbjct: 33   DTGSMTPNSAASPAPPEEEAASPTPGDVPTPS 64


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = +2

Query: 557 PPXASXRXTKTPEDPAANPPKXXRHXHGPGPTPTHATRKGXAPAPRSKTGXT 712
           PP      T TP   +A         HG GP  T       +PA  + TG T
Sbjct: 9   PPTPHESNTSTPVSKSAF---IELQQHGYGPLRTSYQHHFNSPAGNAHTGPT 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,519
Number of Sequences: 336
Number of extensions: 2499
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38638136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)