Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M06
         (1307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 595  GPXXEPPQXPXAXTRAGPHAHPRHTKRXSARTPQQ 699
            GP    P    A +R+G  + PR   R S R P Q
Sbjct: 1760 GPPVGHPTNASAHSRSGSQSMPRQNGRYS-RVPSQ 1793


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/43 (25%), Positives = 15/43 (34%)
 Frame = +1

Query: 607 EPPQXPXAXTRAGPHAHPRHTKRXSARTPQQNRPXXPSPXXTP 735
           + P       +  PH  P+  +R S   P Q  P    P   P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
            variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 948  PKPXTTTXXPDXXPPRERXPPXXPPXXSQTP 1040
            P P  TT         ER PP  P    + P
Sbjct: 619  PSPPVTTKRDGTQETEERLPPLPPKRIRKMP 649


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +1

Query: 592 RGPXXEPPQXPXAXTRAGPHAHPRHTKRXSARTPQQ 699
           RG   EP     +   + PH H   ++  S+  P Q
Sbjct: 611 RGKYEEPTVGEISQDGSSPHFHQSPSQNHSSAVPDQ 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,374
Number of Sequences: 438
Number of extensions: 5363
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45023625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)