Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M05
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 476 SHVLSCVIPLILWITVLPPLSELIPL 399
           S +LS V+ L+L   +LPP S ++PL
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPL 295


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = -1

Query: 723 RKXHASRREKGGQVSGKRQXRNRRAXEGAXQGETPGIFIVLSGFATSDLSVDFCDARQGG 544
           ++ H S   KG  +    Q   R   +    G TP  F + +    +   +D   +R+G 
Sbjct: 597 KREHRSSSTKGITIQEPPQWHTRSTEKRVSAG-TPAAFNISTTIYENQNCLDASSSRRGS 655

Query: 543 GAYGKTPATRPF 508
                TPA   F
Sbjct: 656 KIGSPTPAESTF 667


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 406  YRSPQPNDRAQRVSEXRKRKSAQYANRLSPRVG 308
            Y  PQP +  Q  ++ + +  +Q AN+  P  G
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANKPKPATG 1029


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 497 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 399
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 476 SHVLSCVIPLILWITVLPPLSELIPL 399
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,953
Number of Sequences: 438
Number of extensions: 4252
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)