Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M05
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   5.4  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   5.4  
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    28   7.2  

>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 543 RPPDEHHKNRRSSQRW 590
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 497  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 399
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 497  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 399
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -2

Query: 530 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVL 426
           +R++R  FT   +LLA  S +L  VIP IL IT L
Sbjct: 54  QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGL 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,724
Number of Sequences: 28952
Number of extensions: 297099
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)