Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M04
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical pr...    31   1.4  

>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
            T22H6.6a protein.
          Length = 1405

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -1

Query: 557  STQFCFEEIE---SKVYPEVHSGX*QLLISGKEPLAVVLPTVPGIEAVTFVNFLSAFRCL 387
            S QF FE ++   + VYP  +      L++   P   +LP      +  F+   SAFR L
Sbjct: 1023 SFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISSFFLPTASAFRVL 1082

Query: 386  SNVVSQEVGALNVA 345
            +  +S  +G  + A
Sbjct: 1083 NPTISSIIGGFSSA 1096


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
            protein T22H6.6a protein.
          Length = 1405

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -1

Query: 557  STQFCFEEIE---SKVYPEVHSGX*QLLISGKEPLAVVLPTVPGIEAVTFVNFLSAFRCL 387
            S QF FE ++   + VYP  +      L++   P   +LP      +  F+   SAFR L
Sbjct: 1023 SFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISSFFLPTASAFRVL 1082

Query: 386  SNVVSQEVGALNVA 345
            +  +S  +G  + A
Sbjct: 1083 NPTISSIIGGFSSA 1096


>Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical
           protein T22H6.6b protein.
          Length = 640

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -1

Query: 557 STQFCFEEIE---SKVYPEVHSGX*QLLISGKEPLAVVLPTVPGIEAVTFVNFLSAFRCL 387
           S QF FE ++   + VYP  +      L++   P   +LP      +  F+   SAFR L
Sbjct: 258 SFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISSFFLPTASAFRVL 317

Query: 386 SNVVSQEVGALNVA 345
           +  +S  +G  + A
Sbjct: 318 NPTISSIIGGFSSA 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,174,755
Number of Sequences: 27780
Number of extensions: 220461
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)