Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M03
         (836 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p ...    62   2e-08
UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12...    49   1e-04
UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep: Zgc:5...    42   0.014
UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4; n...    42   0.025
UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome a...    40   0.059
UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RA...    38   0.31 
UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome a...    37   0.55 
UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma j...    36   1.3  
UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11; Liliopsida|...    35   2.9  
UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole gen...    35   2.9  
UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2; ...    35   2.9  

>UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p -
           Drosophila melanogaster (Fruit fly)
          Length = 64

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 27/40 (67%), Positives = 31/40 (77%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTKEKEDXYPVAPW 261
           MAP QRMR+ANE ASK +TMRG VP ++K KE  YPV PW
Sbjct: 1   MAPPQRMRVANEKASKYVTMRGNVPKSSKTKEGQYPVGPW 40



 Score = 40.3 bits (90), Expect = 0.059
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 267 LLSFIFVVCGSAVFQIIQSIRLA 335
           L  FIFVVCGSA+FQI+QSIR A
Sbjct: 42  LALFIFVVCGSAIFQIVQSIRAA 64


>UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12.5;
           n=2; Bilateria|Rep: Putative uncharacterized protein
           T09A12.5 - Caenorhabditis elegans
          Length = 63

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTKEKEDXYPVAPW 261
           MAPKQRM +AN   SKN+T RG VP   K  E  +P + W
Sbjct: 1   MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQW 40


>UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep:
           Zgc:56419 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 66

 Score = 42.3 bits (95), Expect = 0.014
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTK-EKEDXYPVAPW 261
           M  KQR+R+ANE  SKNIT+RG V  +T+  +E+   V PW
Sbjct: 1   MVAKQRIRMANEKHSKNITLRGNVAKSTRGTQEEKAVVGPW 41



 Score = 39.9 bits (89), Expect = 0.077
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +3

Query: 267 LLSFIFVVCGSAVFQIIQSIRL 332
           L  F+FVVCGSA+FQIIQSIR+
Sbjct: 43  LALFVFVVCGSAIFQIIQSIRM 64


>UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4;
           n=33; Eumetazoa|Rep: Ribosome-attached membrane protein
           4 - Homo sapiens (Human)
          Length = 66

 Score = 41.5 bits (93), Expect = 0.025
 Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTKE-KEDXYPVAPW 261
           M  KQR+R+ANE  SKNIT RG V  T++   E+   V PW
Sbjct: 1   MVAKQRIRMANEKHSKNITQRGNVAKTSRNAPEEKASVGPW 41



 Score = 40.3 bits (90), Expect = 0.059
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 267 LLSFIFVVCGSAVFQIIQSIRL 332
           L  FIFVVCGSA+FQIIQSIR+
Sbjct: 43  LALFIFVVCGSAIFQIIQSIRM 64


>UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome
           attached membrane protein 4; n=1; Pan troglodytes|Rep:
           PREDICTED: similar to ribosome attached membrane protein
           4 - Pan troglodytes
          Length = 231

 Score = 40.3 bits (90), Expect = 0.059
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 267 LLSFIFVVCGSAVFQIIQSIRL 332
           L  FIFVVCGSA+FQIIQSIR+
Sbjct: 208 LALFIFVVCGSAIFQIIQSIRM 229


>UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RAMP4
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Ribosome associated membrane protein RAMP4
           containing protein - Tetrahymena thermophila SB210
          Length = 107

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +1

Query: 151 KQRMRIANEIASKNITMRGXVPXTTKEKEDXYPVAPW 261
           KQ+M++ + + +KN+T RG VP + K KE+   V PW
Sbjct: 48  KQQMKLKSNLHNKNVTNRGKVPSSLKSKEEK-SVGPW 83


>UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome
           associated membrane protein 4; n=1; Macaca mulatta|Rep:
           PREDICTED: similar to ribosome associated membrane
           protein 4 - Macaca mulatta
          Length = 177

 Score = 37.1 bits (82), Expect = 0.55
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTKE 231
           M  KQR+R+ANE  SKNIT RG V  T K+
Sbjct: 1   MVAKQRIRMANEKHSKNITQRGNVAKTLKK 30


>UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02042 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 79

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3

Query: 279 IFVVCGSAVFQIIQSIRLA 335
           +FVVCGSAVF+IIQ IR+A
Sbjct: 60  VFVVCGSAVFEIIQHIRMA 78


>UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11;
           Liliopsida|Rep: Os11g0637400 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 573

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 KNITMRGXVPXTTKEKEDXYPVAP 258
           KNIT RG VP TT +K + YPV P
Sbjct: 27  KNITKRGSVPETTVKKGNDYPVGP 50


>UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr1 scaffold_136, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 105

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 KNITMRGXVPXTTKEKEDXYPVAP 258
           KNIT RG VP TT +K   YPV P
Sbjct: 54  KNITKRGSVPETTTKKGSDYPVGP 77


>UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 460

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 KNITMRGXVPXTTKEKEDXYPVAP 258
           KNIT RG VP TT +K + YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,412,731
Number of Sequences: 1657284
Number of extensions: 10058151
Number of successful extensions: 18385
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18384
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)