Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M03
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       35   0.092
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    35   0.092
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974...    30   2.6  
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     28   8.0  
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340           28   8.0  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 KNITMRGXVPXTTKEKEDXYPVAP 258
           KNIT RG VP TT +K + YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 KNITMRGXVPXTTKEKEDXYPVAP 258
           KNIT RG VP TT +K + YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


>05_03_0318 -
           12292969-12293222,12293305-12293898,12297102-12297415,
           12297712-12297893,12297960-12298187,12298234-12298698,
           12299393-12299443
          Length = 695

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 302 CVPDNPINKTSLNHEDNWRTAIENTIK*QHYPSKV-RHNLHQHLFVDMRE 448
           CV     +  S+   D W+T + N  + + Y S + RH+L Q  F+++ E
Sbjct: 206 CVEGKAKDARSITSGDGWKTRVLNRKEVRSYTSDLKRHDLRQQDFLNLEE 255


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +2

Query: 50  YLRVKRNCALWLFESF*FIIKLTNILYNKTKWPLSRECVSPTRSPVKTSQ*GGXYPKLPR 229
           +L+VKRN ++   E    I  L ++  +    PLSR+  SP  S    S       +LPR
Sbjct: 422 HLKVKRNSSVGKSEKAAVIRALRSM--DLEGHPLSRDLPSPRVSDRAESYWLACLEELPR 479

Query: 230 KKKTXILWH 256
             +  ++WH
Sbjct: 480 CSRVILVWH 488


>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
          Length = 603

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 266 LALFHLRSVWLCCVPDNPINKTSLNHEDNW 355
           L L HL+S W  C+ D P  +   +H   W
Sbjct: 325 LVLQHLKSGWKDCITDFPSYRAFSDHRGQW 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,454
Number of Sequences: 37544
Number of extensions: 273383
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)