Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M03
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    49   4e-06
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTKEKEDXYPVAPW 261
           MAPKQRM +AN+  SKN+  RG V  + K  ED YP APW
Sbjct: 1   MAPKQRMTLANKQFSKNVNNRGNVAKSLKPAEDKYPAAPW 40



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +3

Query: 276 FIFVVCGSAVFQIIQSIRL 332
           F+FVVCGSAVF+II+ +++
Sbjct: 45  FVFVVCGSAVFEIIRYVKM 63


>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = +1

Query: 142 MAPKQRMRIANEIASKNITMRGXVPXTTKEKEDXYPVAPW 261
           MAPKQRM +AN   SKN+T RG VP   K  E  +P + W
Sbjct: 1   MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQW 40



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +3

Query: 276 FIFVVCGSAVFQIIQSIRL 332
           FIFVVCGSA+F++I+ I++
Sbjct: 45  FIFVVCGSAIFEVIRYIKV 63


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 299 CCVPD--NPINKTSLNHEDNWRTA 364
           CC P+  N +N  S+ H  NWRTA
Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159


>Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical
           protein T15D6.6 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 130 IKYIXQFNNKLKGLEEPQRAISLDT*IKVKNXKNSL 23
           I+Y+ + NN+ KG+ +  RA   D  +K+   K +L
Sbjct: 44  IRYLCEKNNQCKGMRKNCRACRFDYCVKIAGMKRNL 79


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 284 RSVWLCCVPDNPINKTSLNHEDNWRT 361
           RS+W CC+P    N  S   +  WRT
Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,583
Number of Sequences: 27780
Number of extensions: 249364
Number of successful extensions: 483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)