Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M02
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0016 + 110796-110979,111252-111768,111847-112213                 35   0.10 
12_02_0299 - 17051570-17052474,17053542-17053755                       34   0.14 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   2.9  
07_01_0479 + 3606663-3607448                                           29   6.7  
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983     28   8.9  

>02_01_0016 + 110796-110979,111252-111768,111847-112213
          Length = 355

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 16/58 (27%), Positives = 20/58 (34%)
 Frame = -1

Query: 627 NPFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
           +P   P     P   P P +   +  +    P    P PP   V      PP PPP P
Sbjct: 169 SPIPTPIIAPPPVSSPAPPLPPLWRRRPRRLPPIWRPTPPSLPVDTMPPPPPPPPPQP 226


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = -1

Query: 624 PFXPPXXXKXPF---PHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPP 460
           PF P      PF   P P P    F       AP    PFP    +F     PP PPP
Sbjct: 238 PFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPP 295



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/68 (27%), Positives = 23/68 (33%)
 Frame = -1

Query: 657 FPXFXPXFXGNPFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKX 478
           +P   P     P  PP       P P P    F   +    P     FPP  + +     
Sbjct: 267 WPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPH----FPPLPSFYPSPPP 322

Query: 477 PPXPPPXP 454
           PP PPP P
Sbjct: 323 PPPPPPPP 330


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = -1

Query: 624 PFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
           P  PP     P P P P +           P   +P PPG         PP PP  P
Sbjct: 273 PAAPPPPAGPPPPAPPP-LPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHP 328


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = -3

Query: 721 PPXXXPFXXFXPXXXPXXXKXFSPXXXPIXGKPXXPPLXXEXPFPPP 581
           PP   PF    P   P   +   P   P   +P  PP       PPP
Sbjct: 202 PPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPP 248


>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
          Length = 145

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = -1

Query: 624 PFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
           P+ PP     P P   P     +       P    P PPG   +  Q   P  PP P
Sbjct: 51  PYPPPSGAVYP-PQGYPSSHGVYPPPQGPYPPPHQPPPPGYQGYFNQGQQPYYPPPP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,714
Number of Sequences: 37544
Number of extensions: 179879
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)