Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M02
         (909 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 30   2.2  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  

>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
 Frame = -1

Query: 654 PXFXPXFXGNPFXPPXXXKXPFPHPXPXVXXFFXEKTXXAP-KKXNPFPPGXAVFXXQKX 478
           P   P   G P  PP       P P P +           P    +P PP          
Sbjct: 142 PPIAPATGGPPPPPPIAPATGGPPPPPPIAPAATVPAPAVPLAAASPPPPSGGPPPPPPP 201

Query: 477 PPXPPPXP 454
           PP PPP P
Sbjct: 202 PPPPPPPP 209


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -1

Query: 546 TXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
           T   PK   P PP       +  PP PPP P
Sbjct: 897 TPTTPKPTTPAPPPPLPLAPEPPPPLPPPPP 927


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = -3

Query: 748 GGGGXFXKXPPXXXPFXXFXPXXXPXXXKXFSPXXXPIXGKPXXPPLXXEXPFPPP 581
           GGGG     PP   P     P   P      +P   P   KP  PP     P PPP
Sbjct: 340 GGGGVNPPPPPTNNP-----PSPPPPTNN--TPPPPPPTNKPPPPPPPTNGPPPPP 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,248,777
Number of Sequences: 59808
Number of extensions: 115023
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)