Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M02
(909 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 36 0.037
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 33 0.20
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 32 0.46
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 1.4
At2g02515.1 68415.m00191 expressed protein 30 2.4
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 30 2.4
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 29 4.3
At1g61080.1 68414.m06877 proline-rich family protein 29 5.6
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 28 7.4
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 35.9 bits (79), Expect = 0.037
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -1
Query: 654 PXFXPXFXGNPFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXP 475
P P N P + P P P P + K P P PP V P
Sbjct: 670 PARSPPPISNSDKKPALPRPPPPPPPPPMQHSTVTKVPPPPPPAPPAPPTPIVHTSSPPP 729
Query: 474 PXPPPXP 454
P PPP P
Sbjct: 730 PPPPPPP 736
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/67 (29%), Positives = 24/67 (35%)
Frame = -1
Query: 654 PXFXPXFXGNPFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXP 475
P + P P PP P P P P +P +P PP V+ P
Sbjct: 447 PVYSPPPPPPPPPPPPVYSPPPPPPPPP-----PPPPVYSPPPPSPPPPPPPVYSPPPPP 501
Query: 474 PXPPPXP 454
P PPP P
Sbjct: 502 PPPPPPP 508
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -3
Query: 721 PPXXXPFXXFXPXXXPXXXKXFSPXXXPI-XGKPXXPPLXXEXPFPPP 581
PP P + P P SP P+ P PP+ P PPP
Sbjct: 618 PPPPPPCIEYSPPPPPPVVHYSSPPPPPVYYSSPPPPPVYYSSPPPPP 665
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = -1
Query: 624 PFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPF--PPGXAVFXXQKXPPXPPPXP 454
P PP P P P P + P P PP V+ PP P P P
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTP 531
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 576 PXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
P + + +P+K NP P + F PP PPP P
Sbjct: 251 PLIKNLTPPSSFSSPRKSNPIPNLASEFHPSPPPPPPPPPP 291
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Frame = -1
Query: 642 PXFXGNPFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXN-----PFPPGXAVFXXQKX 478
P P PP + P P P P ++ + P K P PP A ++
Sbjct: 163 PPTVTRPPPPPTITRSP-PPPRPQAAAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRS 221
Query: 477 PPXPPP 460
PP PPP
Sbjct: 222 PPPPPP 227
>At2g02515.1 68415.m00191 expressed protein
Length = 91
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = -3
Query: 658 FSPXXXP---IXGKPXXPPLXXEXPFPPP 581
FSP P I KP PP+ PFPPP
Sbjct: 31 FSPTLKPKFQIDSKPFNPPVIPTEPFPPP 59
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Frame = -1
Query: 615 PPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXX-----QKXPPXPPPXP 454
PP + P P P P ++ +P P PP F Q PP PPP P
Sbjct: 588 PPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQPPPPPPPP 646
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Frame = -1
Query: 588 PHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXX------QKXPPXPPPXP 454
P P P F T +P + P PP +F + PP PPP P
Sbjct: 483 PPPPPPPPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPSQPPPPPPPPP 533
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Frame = -1
Query: 588 PHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVF-----XXQKXPPXPPPXP 454
P P P F T +P + P PP +F PP PPP P
Sbjct: 504 PPPPPPPPPLFMSTTSFSPSQPPPPPPPPPLFTSTTSFSPSQPPPPPPLP 553
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = -1
Query: 615 PPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
PP P P P + + P P PP PP PPP P
Sbjct: 572 PPPPPPPPPPLPSRSIPPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPPPPP 625
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = -1
Query: 612 PXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
P P P P P K P P PP + + PP PPP P
Sbjct: 613 PSPSAPPPPPPPPPSFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPPPPPPPP 665
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = -1
Query: 624 PFXPPXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPP--XPPPXP 454
P PP P P P P V P P PP V+ PP PPP P
Sbjct: 391 PPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSPPYVYPPPPP 449
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 594 PFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
P P P P KT P P P A PP PPP P
Sbjct: 416 PPPPPPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPPPPPP 462
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = -1
Query: 594 PFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
P P P P F + P P PP + PP PPP P
Sbjct: 418 PPPPPPPPPLSFIKTASLPLPSPP-PTPPIADIAISMPPPPPPPPPP 463
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = -1
Query: 612 PXXXKXPFPHPXPXVXXFFXEKTXXAPKKXNPFPPGXAVFXXQKXPPXPPPXP 454
P P PHP P + + PK PP K PP P P
Sbjct: 102 PKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKPP 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,620,220
Number of Sequences: 28952
Number of extensions: 122005
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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