Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M01
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     33   0.21 
06_01_0931 + 7192519-7194075                                           33   0.37 
05_01_0499 - 4166891-4166942,4167191-4167510                           31   1.1  
05_07_0359 - 29539294-29540832,29542366-29542518                       31   1.5  
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     31   1.5  
02_02_0272 - 8452994-8453187,8453850-8454975                           29   6.0  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   8.0  
07_03_0723 + 20954827-20954905,20954974-20956277                       28   8.0  
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390...    28   8.0  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -1

Query: 377 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 261
           G   P R+SP    L+   PAEAALS  RSL S  P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176


>06_01_0931 + 7192519-7194075
          Length = 518

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -1

Query: 614 LPPXE*SFRLMTSECAALSDAPTFCLNM*SSPPPSVLKLGALGMALGEFLIANALALRSW 435
           +PP +   R     CAAL+ +P       SS PPS         A    ++   +ALR+ 
Sbjct: 50  VPPGQTFERACIQACAALAFSPPAVAADLSSLPPS---------ASSPLVLVPNVALRTA 100

Query: 434 LLLW-NKLTLPATPSCSPKPGMRVPVRLSPCP 342
           +L W ++L+LP     SP     V  RL P P
Sbjct: 101 ILNWCDRLSLPYPAPLSPDTARDVVRRLMPSP 132


>05_01_0499 - 4166891-4166942,4167191-4167510
          Length = 123

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 467 LIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 306
           LI   LALR   LL N +     PS SP+   +   R  P P + + ASP+ +A
Sbjct: 5   LIIVPLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58


>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = -1

Query: 398 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 219
           P    KPG   P R +P P   S +S A AA +L   +K           + P+R   + 
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213

Query: 218 APEVPSEFTVKLPAXLRARXATWLPR 141
            P  P +     P  L A+     PR
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRPR 239


>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 277 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 420
           A  N+R + S AS  +A  + + HG+ + G   P +G     AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220


>02_02_0272 - 8452994-8453187,8453850-8454975
          Length = 439

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 362 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 231
           +RL P P +L RA+   A  + WR L +ADP  L  F +   RG
Sbjct: 20  LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 365 PVRLSPCPFTLSRASPAEAA 306
           P+RLSP P ++SR  P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172


>07_03_0723 + 20954827-20954905,20954974-20956277
          Length = 460

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 392 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 291
           CSP P  R+P+R  + C     +ASP   + + WR
Sbjct: 62  CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93


>03_03_0204 +
           15436660-15437244,15437355-15437632,15438792-15439068,
           15439160-15439405,15440853-15441134
          Length = 555

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 419 KLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 279
           K + P+  +    P    P  ++P P    + +PA  A+  WR+ K+
Sbjct: 59  KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,825
Number of Sequences: 37544
Number of extensions: 299140
Number of successful extensions: 1034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)