Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M01
(833 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 29 3.5
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 29 4.6
SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8) 29 6.1
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 29 6.1
SB_44152| Best HMM Match : CRAM_rpt (HMM E-Value=0.021) 28 8.1
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 8.1
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 497 GALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 348
G + M + + LIA A+++ N L +PA S PKP V V+ SP
Sbjct: 395 GDMDMQISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPA-PVQVQASP 443
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 196 NSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 300
N D T G+ + +PL ++K V+ +G ND HK
Sbjct: 544 NKD-TDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577
>SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8)
Length = 206
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 407 PATPSCSP--KPGMRVPVRLSPCPFTLSRASPA-EAALSLWRSLKSADPM 267
P TPSCSP + + +PVRL LS +P EA + L S+K+ P+
Sbjct: 10 PLTPSCSPLERDVLALPVRLG----GLSMTNPCLEADIELSSSVKATAPL 55
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 28.7 bits (61), Expect = 6.1
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 1/177 (0%)
Frame = +1
Query: 169 RXQAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGH 348
+ ++G V G ++ + D NV I + DFN + + A +++
Sbjct: 587 KGKSGDIDVEGPELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIEGPDA-----DIDSP 641
Query: 349 GLSLTGTRIPGF-GEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGL 525
G G ++P F G G GK + + D+ F N I + P+ N L G +
Sbjct: 642 GWKFKGPKMPKFKGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDI 694
Query: 526 DYMFKQKVGASLSAAHSDVIXRNDYSXGGKLNLFQSPXSSLXFXAGXXXFDTPFYRS 696
D V + +D+ G K+ F+ P +G FD P ++S
Sbjct: 695 DTP-DVNVKGDIDGPDADLHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDFDGPDFKS 750
Score = 28.3 bits (60), Expect = 8.1
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 1/173 (0%)
Frame = +1
Query: 169 RXQAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGH 348
+ ++G V G ++ + D NV I + DFN + + A ++NG
Sbjct: 179 KGKSGDIDVEGPELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIDGPDA-----DINGP 233
Query: 349 GLSLTGTRIPGF-GEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGL 525
G ++P F G G GK + + D+ F N I + P+ N L G +
Sbjct: 234 SWKFKGPKMPKFKGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDI 286
Query: 526 DYMFKQKVGASLSAAHSDVIXRNDYSXGGKLNLFQSPXSSLXFXAGXXXFDTP 684
D V + +DV G K+ F+ P +G +D P
Sbjct: 287 DTP-DVNVKGDIDGPDADVHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDYDGP 338
>SB_44152| Best HMM Match : CRAM_rpt (HMM E-Value=0.021)
Length = 697
Score = 28.3 bits (60), Expect = 8.1
Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Frame = +1
Query: 169 RXQAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGH 348
+ ++G V G G +K + D N+ I + DFN + + A +++
Sbjct: 274 KGKSGDIEVEGPGFKGPKIKGDIDTPDINLKGDIDTPDFNVKGDIDGPDA-----DIDSP 328
Query: 349 GLSLTGTRIPGF-GEQLGVAGKVNLFHNNNHDL-SAKAFAIRNSPSAIPNAPNFNTLGGG 522
G G ++P G G GK + D K A P A P+ + GG
Sbjct: 329 GWKFKGPKMPKLKGPSFGGKGKSGDSDYDGPDFDKPKVKANVEVPDASIKGPDIDGSAGG 388
Query: 523 LDYMFKQKV---GASLSAAH--SDVIXRNDYSXGGKLNLFQSP 636
+ + G + A H S +D+S G + F+ P
Sbjct: 389 RINLPDANIKGPGLKIKADHEESSSDSDDDHSHGFSMPKFKMP 431
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = -1
Query: 422 NKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSL 243
+ + + ATPS SP P VP L + ++P+ AA S+ + L T
Sbjct: 218 SSVVVAATPSTSPVPATFVP-SLPTVASASTLSAPSVAASSIATPVNKTVVATLKTL--A 274
Query: 242 PVRGTFRAAPEVPSEFTVKLPAXLRAR 162
PV R PS +++ P + R
Sbjct: 275 PVVVVSRGVSISPSSSSIRTPVSIAVR 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,745
Number of Sequences: 59808
Number of extensions: 285161
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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