Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M01
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    28   6.6  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    28   8.8  

>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 227 FRAAPEVPSEFTVKLPAXLRARXATW 150
           +R +P+ P EF   L A  RAR  TW
Sbjct: 885 YRPSPDFPVEFEGVLEAIFRARRRTW 910


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
           NUF1 protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; similar to
           Myosin heavy chain, smooth muscle isoform (SMMHC)
           (SP:P35749) {Homo sapiens}
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 257 TFLSLPVRGTFRAAPEVPSEFTVKLPAXLRARXATW 150
           T+   P R  +R +PE P EF   L A  RAR   W
Sbjct: 285 TWTEFPDR--YRPSPEFPVEFEGVLEAIFRARRRAW 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,151,460
Number of Sequences: 28952
Number of extensions: 196481
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)