Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L24
         (962 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary...    62   2e-08
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos...    54   5e-06
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom...    53   1e-05
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar...    53   1e-05
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ...    44   0.006
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ...    44   0.008
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia...    34   4.7  

>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
           Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
           gambiae (African malaria mosquito)
          Length = 269

 Score = 62.5 bits (145), Expect = 2e-08
 Identities = 36/82 (43%), Positives = 40/82 (48%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G KI  +GLKGRV EV   D       ER   K +L  E V G +V     GM    DK 
Sbjct: 54  GTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKL 113

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R MVKKW    E  +DVK  DG
Sbjct: 114 RSMVKKWQTLIECSVDVKTTDG 135


>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
           Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
           - Dictyostelium discoideum AX4
          Length = 273

 Score = 54.0 bits (124), Expect = 5e-06
 Identities = 31/82 (37%), Positives = 38/82 (46%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G K+  +GLKGRV EV   D        +   K +L  E V G NV     GM    DK 
Sbjct: 52  GTKLASDGLKGRVYEVSLAD--MKDDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKL 109

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R ++ KW    E  +DVK  DG
Sbjct: 110 RSLIHKWSTLIECFVDVKTTDG 131


>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
           shotgun sequence; n=3; core eudicotyledons|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 656

 Score = 53.2 bits (122), Expect = 1e-05
 Identities = 32/81 (39%), Positives = 38/81 (46%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G KI  EGLK RV E+   D       ++   K RL  E V G NV     GM    DK 
Sbjct: 448 GTKIASEGLKHRVFEISLAD--LQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKL 505

Query: 447 RWMVKKWXXXXEXXIDVKXXD 509
           R +V+KW    E  +DVK  D
Sbjct: 506 RSLVRKWQTLIEAHVDVKTTD 526


>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
           Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
           (Human)
          Length = 264

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 34/82 (41%), Positives = 37/82 (45%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G KI  +GLKGRV EV   D       E    K +L  E V G N      GM    DK 
Sbjct: 54  GTKIASDGLKGRVFEVSLADL---QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 110

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
             MVKKW    E  +DVK  DG
Sbjct: 111 CSMVKKWQTMIEAHVDVKTTDG 132


>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
           n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 256

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 26/81 (32%), Positives = 35/81 (43%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           GMK   + LKGR+ EV   D       +    K +L  + V G N      G+    DK 
Sbjct: 53  GMKNANDALKGRIFEVSLAD--LQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKL 110

Query: 447 RWMVKKWXXXXEXXIDVKXXD 509
           R +V+KW    E  + VK  D
Sbjct: 111 RSLVRKWQSLIEANVTVKTTD 131


>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
           Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
           protein S3a - Entamoeba histolytica HM-1:IMSS
          Length = 257

 Score = 43.6 bits (98), Expect = 0.008
 Identities = 28/82 (34%), Positives = 35/82 (42%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G +I  E LKGRV EV   D       +      +   E V G +      G+    DK 
Sbjct: 55  GTRIASEQLKGRVVEVNLAD--LMENEKFGAYNYKFKCEDVNGKDCLMIFHGLKLTTDKL 112

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R +VKKW    E  +DVK  DG
Sbjct: 113 RSIVKKWCTLIETSVDVKTTDG 134


>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
           asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
           (Asian tapeworm)
          Length = 183

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +3

Query: 363 KXRLXXEYVXGXNVXXXXXGMXXXXDKXRWMVKKWXXXXEXXIDVKXXDG 512
           K +L  E V G +      GM    DK   MV KW    E  +DVK  DG
Sbjct: 9   KFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDG 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,165,605
Number of Sequences: 1657284
Number of extensions: 981655
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89407040613
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)