Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L24
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    42   1e-04
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    41   2e-04

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G+K   + LKGR+ EV   D       E    K +L  E + G +      G+    DK 
Sbjct: 53  GLKNANDSLKGRILEVSLAD--LQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKL 110

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R +V+KW    E    +K  DG
Sbjct: 111 RSLVRKWQTTIEADQTIKTTDG 132


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G+K   + LKGR+ EV   D       E    K +L  E + G +      G     DK 
Sbjct: 53  GLKNANDSLKGRILEVSLAD--LQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKL 110

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R +V+KW    E    +K  DG
Sbjct: 111 RSLVRKWQSTIEANQTIKTTDG 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,021
Number of Sequences: 5004
Number of extensions: 4715
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)