Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L24
         (962 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    60   7e-11

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 60.5 bits (140), Expect = 7e-11
 Identities = 35/82 (42%), Positives = 39/82 (47%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G KI  +GLKGRV EV   D       ER   K +L  E V G +V     GM    DK 
Sbjct: 54  GTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKL 113

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R MV KW    E  +DVK  DG
Sbjct: 114 RSMVNKWQTLIECSVDVKTTDG 135



 Score = 28.3 bits (60), Expect = 0.37
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = +1

Query: 115 VGKNKXXXXXXXXXXXXXIVXXXXXKDWXDVKXXXMXXKRXVGXXXV 255
           VGKNK             +V     KDW DVK   M   R  G   V
Sbjct: 3   VGKNKGVSKGGKKGSKKKVVDPFTRKDWYDVKAPNMFKNRQSGKTLV 49


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,887
Number of Sequences: 2352
Number of extensions: 1057
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105843456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)