Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L24
         (962 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)            57   2e-08
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...    54   1e-07

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 35/82 (42%), Positives = 38/82 (46%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G KI  EGLK RV EV   D       +    K RL  E V G NV     GM    DK 
Sbjct: 53  GTKIASEGLKHRVFEVSLAD--LQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKL 110

Query: 447 RWMVKKWXXXXEXXIDVKXXDG 512
           R +VKKW    E  +DVK  DG
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTDG 132


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 34/81 (41%), Positives = 37/81 (45%)
 Frame = +3

Query: 267 GMKIXXEGLKGRVXEVXXXDX*FXXXXERXXXKXRLXXEYVXGXNVXXXXXGMXXXXDKX 446
           G KI  EGLK RV EV   D       +    K RL  E V G NV     GM    DK 
Sbjct: 53  GTKIASEGLKHRVFEVSLAD--LQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKL 110

Query: 447 RWMVKKWXXXXEXXIDVKXXD 509
           R +VKKW    E  +DVK  D
Sbjct: 111 RSLVKKWQTLIEAHVDVKTTD 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,568,188
Number of Sequences: 28952
Number of extensions: 24056
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)