Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L23
         (1307 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    29   8.9  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   8.9  

>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 160 PPPPPXXSXLXPXPXXSP 107
           PPPPP  S L P P  SP
Sbjct: 165 PPPPPYPSPLPPPPSPSP 182


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 211 PXXPFFXXXXXSXXFXSPPPPPXXSXLXPXPXXSP 107
           P  P +        +  PPPPP  S   P P  SP
Sbjct: 511 PPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPVHSP 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.304    0.139    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,663,410
Number of Sequences: 28952
Number of extensions: 54325
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3402975488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)