Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L22
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 32 0.59
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 32 0.59
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.0
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 5.5
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.1 bits (72), Expect = 0.25
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Frame = +2
Query: 440 PPXXGXGGXXXXGG----GGPPPPXXXXXXXFXXKKKXPFFXPXKKXGXGAXPPPPPXXX 607
PP G GG G GGPPPP P G G PPPP
Sbjct: 527 PPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPP-GAGQGGPPPPGAG 585
Query: 608 XXXXXXXXXXXXGGXPPP 661
GG PPP
Sbjct: 586 QEGPPPPGAGQGGGPPPP 603
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = -3
Query: 659 GGGPPPXXXXXXXXXXXXXXGGGGGXAPPXXFFXXXKKKXFFFFXXXXXXPXXXXGGGPP 480
GGGPPP G GGG PP P GGGPP
Sbjct: 511 GGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPP 570
Query: 479 ---XXXXXPPP 456
PPP
Sbjct: 571 PPGAGQGGPPP 581
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +2
Query: 479 GGGPPPPXXXXXXXFXXKKKXP-FFXPXKKXGXGAXPPPPPXXXXXXXXXXXXXXXGGXP 655
GGGPPPP + P G G PPPP G P
Sbjct: 500 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQP 559
Query: 656 PP 661
PP
Sbjct: 560 PP 561
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.9 bits (69), Expect = 0.59
Identities = 26/105 (24%), Positives = 27/105 (25%)
Frame = +3
Query: 348 PRAPPXXXXGPXFLKKPPXXFXXKXXXXXXPPXXXGGGGXXXXXGGAPPXPPXRXXXXXX 527
PR P G PP PP GG G+ P PP
Sbjct: 118 PRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPPPMGKPPPP 177
Query: 528 KKKKXLFFXXXKKXXGGRXPPPPPXXXXXXXXXXXXXXXGGXPPP 662
K F G PPPPP G PPP
Sbjct: 178 SGNKPTFGNSRTSTNG---PPPPPHSRHGSAPPPPERSSGPPPPP 219
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 31.9 bits (69), Expect = 0.59
Identities = 26/105 (24%), Positives = 27/105 (25%)
Frame = +3
Query: 348 PRAPPXXXXGPXFLKKPPXXFXXKXXXXXXPPXXXGGGGXXXXXGGAPPXPPXRXXXXXX 527
PR P G PP PP GG G+ P PP
Sbjct: 30 PRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPPPMGKPPPP 89
Query: 528 KKKKXLFFXXXKKXXGGRXPPPPPXXXXXXXXXXXXXXXGGXPPP 662
K F G PPPPP G PPP
Sbjct: 90 SGNKPTFGNSRTSTNG---PPPPPHSRHGSAPPPPERSSGPPPPP 131
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 574 GGAXPPPPPXXXXXXXXXXXXXXGGGPPP 660
GGA PPPPP GGG PP
Sbjct: 673 GGAPPPPPPPLPGGAAPPPPPPIGGGAPP 701
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +2
Query: 440 PPXXGXGGXXXXGGGGPPPPXXXXXXXFXXKKKXPFFXPXKKXGXGAXPPPPP 598
PP GG GG PPPP P G GA PPPPP
Sbjct: 663 PPPPPPGGQ---AGGAPPPPPPPLPGGAAPPPPPPI-------GGGAPPPPPP 705
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 573 GGRXPPPPPXXXXXXXXXXXXXXXGGXPPPXKKXXG 680
GG PPPPP GG PPP G
Sbjct: 673 GGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFG 708
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 495 GGGPPPPXXXXPPXPXXGG 439
GG PPPP PP P GG
Sbjct: 311 GGAPPPPPPPPPPPPGDGG 329
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 493 GGAPPXXXXXPPPPXXXGG 437
GGAPP PPPP GG
Sbjct: 311 GGAPPPPPPPPPPPPGDGG 329
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/86 (25%), Positives = 22/86 (25%), Gaps = 5/86 (5%)
Frame = +3
Query: 438 PPXXXGGGGXXXXXGGAPPXPPXRXXXXXXKKKKXLFFXXXKKXXGGRXPPP-----PPX 602
PP G G APP PP R G PPP PP
Sbjct: 298 PPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPP 357
Query: 603 XXXXXXXXXXXXXXGGXPPPXKKXXG 680
GG PPP G
Sbjct: 358 VGGAAPPPPPPPPVGGPPPPPPPIEG 383
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 438 PPXXXGGGGXXXXXGGAPPXPP 503
PP GG GGAPP PP
Sbjct: 954 PPPPPPGGSAPPPGGGAPPLPP 975
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,458
Number of Sequences: 59808
Number of extensions: 244872
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -