Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L22
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    32   0.37 
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   3.4  
At1g15830.1 68414.m01900 expressed protein                             29   3.4  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   4.5  
At1g61080.1 68414.m06877 proline-rich family protein                   29   4.5  
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa...    28   6.0  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +3

Query: 348 PRAPPXXXXGPXFLKKPPXXFXXKXXXXXXPPXXXGGGGXXXXXGGAPPXPP 503
           PR PP    G      P             PP   GGG      GG PP PP
Sbjct: 652 PRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPP 703



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXPXXGG 439
           GGG PPPP    PP P   G
Sbjct: 687 GGGPPPPPGGGPPPPPPPPG 706



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 479 GGGPPPPXXXXXXXFXXKKKXPFFXPXKKXGXGAXPPPPP 598
           GGGPPPP              P   P    G G  PPPPP
Sbjct: 676 GGGPPPPPPP-----------PGGGPPPPPGGGPPPPPPP 704


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 488 PPPPXXXXXXXFXXKKKXPFFXPXKKXGXGAXPPPPP 598
           PPPP          K   P   P      GA PPPPP
Sbjct: 683 PPPPPPKANISNAPKPPAPPPLPPSSTRLGAPPPPPP 719


>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXPXXGGXXXXXGXXXXKXGGVFLKXGGXPXKXGXP 352
           GGGG P      PP    GG     G    K GG     GG P   G P
Sbjct: 128 GGGGEPAIPGAPPPKRGGGGEPVIPGAPPPKRGG-----GGEPVIPGAP 171



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXPXXGGXXXXXGXXXXKXGGVFLKXGGXPXKXGXP 352
           GGGG P      PP    GG     G    K GG     GG P   G P
Sbjct: 144 GGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGG-----GGEPVIPGAP 187



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXPXXGGXXXXXGXXXXKXGGVFLKXGGXPXKXGXP 352
           GGGG P      PP    GG     G    K GG     GG P   G P
Sbjct: 160 GGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGG-----GGEPVIPGAP 203



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXPXXGGXXXXXGXXXXKXGGVFLKXGGXPXKXGXP 352
           GGGG P      PP    GG     G    K GG     GG P   G P
Sbjct: 176 GGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGG-----GGEPVIPGAP 219



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXPXXGGXXXXXGXXXXKXGGVFLKXGGXPXKXGXP 352
           GGGG P      PP    GG     G    K GG     GG P   G P
Sbjct: 192 GGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGG-----GGEPVIPGAP 235



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/78 (28%), Positives = 23/78 (29%)
 Frame = +1

Query: 277 PPXXKKVGXAPXFPRG*KKKKXXXPGXPXFXGXAPXF*KNPPXFXXXXTXXXXXPPXXXX 456
           PP  +  G  P  P G    K    G P   G  P     P             PP    
Sbjct: 123 PPPIRGGGGEPAIP-GAPPPKRGGGGEPVIPGAPP-----PKRGGGGEPVIPGAPPPKRG 176

Query: 457 GGGXXXXXGGPPPXXXXG 510
           GGG     G PPP    G
Sbjct: 177 GGGEPVIPGAPPPKRGGG 194



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/78 (28%), Positives = 23/78 (29%)
 Frame = +1

Query: 277 PPXXKKVGXAPXFPRG*KKKKXXXPGXPXFXGXAPXF*KNPPXFXXXXTXXXXXPPXXXX 456
           PP  +  G  P  P G    K    G P   G  P     P             PP    
Sbjct: 139 PPPKRGGGGEPVIP-GAPPPKRGGGGEPVIPGAPP-----PKRGGGGEPVIPGAPPPKRG 192

Query: 457 GGGXXXXXGGPPPXXXXG 510
           GGG     G PPP    G
Sbjct: 193 GGGEPVIPGAPPPKRGGG 210



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/78 (28%), Positives = 23/78 (29%)
 Frame = +1

Query: 277 PPXXKKVGXAPXFPRG*KKKKXXXPGXPXFXGXAPXF*KNPPXFXXXXTXXXXXPPXXXX 456
           PP  +  G  P  P G    K    G P   G  P     P             PP    
Sbjct: 155 PPPKRGGGGEPVIP-GAPPPKRGGGGEPVIPGAPP-----PKRGGGGEPVIPGAPPPKRG 208

Query: 457 GGGXXXXXGGPPPXXXXG 510
           GGG     G PPP    G
Sbjct: 209 GGGEPVIPGAPPPKRGGG 226


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 659 GGGPPPXXXXXXXXXXXXXXGGGGGXAPP 573
           GG PPP              GGGGG +PP
Sbjct: 62  GGKPPPHGGKGGGPPHHGGGGGGGGKSPP 90


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 476 GGGGPPPPXXXXXXXFXXKKKXPFFXPXKKXGXGAXPPPPP 598
           G GGPPPP              P   P       A PPPPP
Sbjct: 586 GSGGPPPPPPPMPLANGATPPPP-PPPMAMANGAAGPPPPP 625


>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|P27048 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Mus musculus}
          Length = 254

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 498 GGGGPPPPXXXXPPXP 451
           G GGPPPP    PP P
Sbjct: 169 GQGGPPPPYGMRPPYP 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,755
Number of Sequences: 28952
Number of extensions: 267915
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)