Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L21
         (934 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    30   2.5  
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont...    28   7.7  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    28   7.7  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    28   7.7  

>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 382 TSPCTSSEILQQLFLFSVVVPYSFRY 305
           T  C  SEI ++L+L   ++PY FR+
Sbjct: 596 THTCYDSEIYKELYLVVAIIPYWFRF 621


>At5g45510.1 68418.m05590 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 1222

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 423 QDEGMKLLLYSINSITLRTLKRSTRLPVLRVCISIKVNSCMPSTSLLSQRSDC 581
           QD  +   L+S+  + LR   +  RLP L+    +++     +TSL+     C
Sbjct: 803 QDSAVAAKLHSLTRLLLRNCSKLRRLPSLKPLSGLQILDLSGTTSLVEMLEVC 855


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 574 ERWDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 470
           E   N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 846 EALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 574 ERWDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 470
           E   N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 846 EALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,347
Number of Sequences: 28952
Number of extensions: 300236
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)