Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L20
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   151   2e-37
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.66 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   1.2  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   1.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.7  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   3.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   8.2  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   8.2  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  151 bits (365), Expect = 2e-37
 Identities = 78/201 (38%), Positives = 121/201 (60%), Gaps = 3/201 (1%)
 Frame = +3

Query: 180 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKXNMIDYVTDIRRML- 356
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L   NM DYV ++   L 
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73

Query: 357 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 530
             + +ED      ++R  VL EL EL++ V+ +L +++  D++  +   +D    + HL 
Sbjct: 74  GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130

Query: 531 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAXE 710
             + Y    E I  +Y+ A+++Y CGNY  ++  LY  +      + N  S  WGK A E
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASE 188

Query: 711 ILXXNWDGALDDLTKXREFID 773
           IL  +WDGA+++L K RE +D
Sbjct: 189 ILTVDWDGAMEELGKLREMVD 209


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 483 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 614
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 195  FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 314
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 605 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 444
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 680 QIILVSXRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRI 501
           Q++ V  +HHQ       C   I + F  IFGQ I AID ++ KL  +  +    +SF  
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384

Query: 500 P 498
           P
Sbjct: 385 P 385


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 468  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 590
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 294 KLEILSKXNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 473
           K+ + S  N I Y +    +L      P+E ++ RG+ +   Q  +++ E VL+      
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247

Query: 474 VMK 482
           V K
Sbjct: 248 VCK 250


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 441  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 560
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 333 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 452
           VTDI+ +L  + DTP   ++  G   +     L+  +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,198
Number of Sequences: 5004
Number of extensions: 54719
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)