Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L20
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 161 7e-40
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 122 5e-28
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 114 1e-25
07_03_1700 - 28810239-28810870,28811304-28812594 30 2.1
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 29 3.7
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 28 8.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.6
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 28 8.6
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 161 bits (391), Expect = 7e-40
Identities = 76/199 (38%), Positives = 130/199 (65%)
Frame = +3
Query: 177 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKXNMIDYVTDIRRML 356
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS NM+DY DI + L
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61
Query: 357 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 536
+ ++ P+++++RR V+S L+ L +A P++ +Q + ++ +R K H+ +
Sbjct: 62 HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHMLQD 118
Query: 537 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAXEIL 716
+ ++ E I+++Y+ AK++++CGNY ++A YLY + + + ++++ LS LWGKLA EIL
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERS-LSALWGKLAAEIL 176
Query: 717 XXNWDGALDDLTKXREFID 773
NWD ALD+L + +E ID
Sbjct: 177 MQNWDVALDELNRLKEIID 195
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 122 bits (293), Expect = 5e-28
Identities = 71/199 (35%), Positives = 114/199 (57%)
Frame = +3
Query: 177 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKXNMIDYVTDIRRML 356
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L NM+DY DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSR 61
Query: 357 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 536
Y +D PE++++RR V+S L L +A++ + + Q IET+
Sbjct: 62 YGTDDVPEDMVKRRAEVVSRLTSLGEAIDNIHQNQQIGP--DQIETL------------- 106
Query: 537 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAXEIL 716
Y++ AK++++CGNY +A YL+ + + + +++ LS LWGKLA EIL
Sbjct: 107 --YQY-----------AKFQFDCGNYSFAAQYLHQYRALCTNIERS-LSALWGKLAAEIL 152
Query: 717 XXNWDGALDDLTKXREFID 773
NWD AL++L + +E ID
Sbjct: 153 MQNWDVALEELNRLKEIID 171
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 114 bits (274), Expect = 1e-25
Identities = 65/208 (31%), Positives = 120/208 (57%), Gaps = 9/208 (4%)
Frame = +3
Query: 177 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSKX-NMIDYVTDIR 347
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + NM+DY D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 348 RMLYPEED------TPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK 509
++L+ + D P+++++RR V++ L L P++ ++ + P
Sbjct: 62 KLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPD 113
Query: 510 TLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVL 689
N ++ ++ + I+++Y+ AK++++CGNY ++A L+ + + + ++++ LS
Sbjct: 114 KEHNIRMLHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS-LSAQ 172
Query: 690 WGKLAXEILXXNWDGALDDLTKXREFID 773
WGKL+ EIL NWD AL++L +E ID
Sbjct: 173 WGKLSAEILNNNWDVALEELNCLKEMID 200
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = +3
Query: 264 TYDQSELLQAKLEILSKXNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVE 443
T+D +LL+A E+L K + Y T + +L ED +++R V++ +E + +E
Sbjct: 336 TFDLEDLLRASAEVLGKGS---YGTAYKAIL---EDGTVVVVKRLKDVVAGKKEFEQQME 389
Query: 444 PVLRLMQRDDV--MKTIETMRDPKTLINHLSTNKEYEFKIEMI 566
+ RL + ++ ++ +D K ++ TN + K+ I
Sbjct: 390 LIGRLGKHANLVPLRAYYYSKDEKLIVYDYLTNGSFSTKLHGI 432
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 354 LYPEEDTPEEIIQRRGVVLSELQELQDAVEPV 449
L P+EDT E ++RRGV L+E + +AV+ V
Sbjct: 392 LLPKEDTYVEFLKRRGVPLTERECSTNAVDIV 423
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 297 LEILSKXNMIDY---VTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 452
+EIL + +++ V I ++LY ED P + + + ++ + Q Q + P+L
Sbjct: 225 VEILCQSPEVEHLPIVNAIHKVLYAAEDDPSMVAEAQAMISQQQQSEQPMLSPIL 279
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 100 GCWFLPTTCVSIFIRIHENKLST*VTQNLI----*RLK*DSILIGISCFLY*NS*QQRRH 267
GC LP + + F+R+ E+ LST QN+I R S+ +SC L Q H
Sbjct: 108 GCPVLPLSLIQHFLRVCEHWLSTGNNQNIILLHCERGGWPSLAFMLSCLLIFKKLQSAEH 167
Query: 268 MT 273
T
Sbjct: 168 KT 169
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -1
Query: 501 PSWFQL----FSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQD 358
PS F+L FSL L A VS ++L H E +P+++H + L+ C+ +D
Sbjct: 367 PSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSP--LEACVQKD 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,128
Number of Sequences: 37544
Number of extensions: 316051
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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