Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L20
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   142   4e-34
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    31   1.1  
Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   4.4  
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  142 bits (343), Expect = 4e-34
 Identities = 70/202 (34%), Positives = 122/202 (60%), Gaps = 3/202 (1%)
 Frame = +3

Query: 177 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKXNMIDYVTDIRRML 356
           S FDLT ++  +LD HL+ PLLEF+  +  YD+  L +   ++L+K NMID V +     
Sbjct: 2   STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIET---- 57

Query: 357 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK---TLINHL 527
           Y  +  P  I  ++  ++ E  EL+  V+ V+ +++  +V + ++  R+      ++ HL
Sbjct: 58  YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117

Query: 528 STNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAX 707
           + N  + F ++M+D++++ +K+ YECGNY  ++  LY+ + +++  D NYL+ L+GKLA 
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175

Query: 708 EILXXNWDGALDDLTKXREFID 773
           EIL   W+ A DDL K R +ID
Sbjct: 176 EILLQEWEHARDDLLKLRAYID 197


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 569  IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 390
            ++H + K I   C + V ++    H F  +++++ +  S+Y +  I+  LQ+    TS  
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782

Query: 389  YNFFRSVFFRIEHSSDV 339
            YN      F  + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799


>Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical
           protein T16H12.2 protein.
          Length = 181

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 294 KLEILSKXNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 446
           K  I+ +     +V  +  +LYP++DTP +I++ R   L   Q+ +D  EP
Sbjct: 110 KHHIVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 213 LDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKXNMIDYVTDIRRMLYPEEDTP 377
           L R ++  L EF    +TY   E L+AKLE  +   + +    ++    PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 452 QYWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNIIYHVXFAQN 303
           ++  YC+L  +     +TSP    F SVF RI     +  I+Y + F ++
Sbjct: 170 KFGYYCLLGVISISYYFTSPQTTAFNSVFARIWQFL-IGMIVYLIYFKKS 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,724
Number of Sequences: 27780
Number of extensions: 304967
Number of successful extensions: 897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)