Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L19
         (1015 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.93 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.7  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   6.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
            protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 1011 GGGXGGGXXXXGGXGGG 961
            GGG GGG     G GGG
Sbjct: 92   GGGRGGGRDGDRGDGGG 108


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 634 PPPPPPP 654
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 730 PXXPPXPTPPP 762
           P  PP P+PPP
Sbjct: 95  PTTPPTPSPPP 105


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 719 PPXPPXXXPXQPPPPPP 769
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 706 PXXPPPXPPXXPPXPTP 756
           P  P P PP  PP   P
Sbjct: 23  PHSPEPYPPRCPPIYEP 39


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 721 PXPPXXPPXPTPPPXP 768
           P  P  PP P PP  P
Sbjct: 175 PPLPQVPPLPLPPIFP 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,261
Number of Sequences: 336
Number of extensions: 5362
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28764063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)